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Profile
Travis Wheeler
Member of the Graduate Faculty | Associate Professor
Pharmacy Practice and Science
Overview
Research
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Collaboration
(17)
Teshia Solomon
Mutual work: 1 Proposal
Collaboration Details
Tyson Swetnam
Mutual work: 2 Proposals
Collaboration Details
Francisco Moreno
Mutual work: 1 Grant﹒1 Proposal
Collaboration Details
Jason Karnes
Mutual work: 1 Grant﹒2 Proposals
Collaboration Details
Michael Johnson
Mutual work: 1 Proposal
Collaboration Details
Page 1 of 4
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Grants
(11)
Persistence Control of Engineered Functions in Complex Soil Microbiomes (PerCon)
Active
·
2024
·
$442.4K / $147.5K
·
External
Principal Investigator (PI)
soil microbiomes,
engineered functions,
persistence control,
complexity,
soil ecology
Discovery of Immunogenomic Associations with Disease and Differential Risk Across Diverse Populations
Active
·
2023
·
$204.2K / $408.4K
·
External
Multiple Principal Investigator (MPI)
immunogenomic associations,
disease risk,
diverse populations,
discovery,
immunogenomics
Machine Learning Approaches for Integrating Multi-Omics Data to Expand Microbiome Annotation
Active
·
2023
·
$299.3K
·
External
Principal Investigator (PI)
machine learning,
multi-omics data,
microbiome annotation,
integrating data,
biological annotation
Dfam: Sustainable Growth, Curation Support, and Improved Quality for Mobile Element Annotation
Active
·
2023
·
$206.2K
·
External
Principal Investigator (PI)
genomic annotation,
sustainable development,
mobile elements,
data curation,
quality improvement
Machine Learning Approaches for Improved Accuracy and Speed in Sequence Annotation
Active
·
2022
·
$485.7K
·
External
Principal Investigator (PI)
machine learning,
sequence annotation,
accuracy,
speed,
improvement
Page 1 of 3
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Publications
(17)
Recent
NEAR: Neural Embeddings for Amino acid Relationships
2024
neural networks,
bioinformatics,
amino acids,
protein modeling,
machine learning
nail: software for high-speed, high-sensitivity protein sequence annotation
2024
bioinformatics,
protein sequencing,
computational biology,
software development,
data analysis
Sensitive and error-tolerant annotation of protein-coding DNA with BATH
2024
genomics,
bioinformatics,
molecular biology,
computational biology,
annotation
Framework of the Alu Subfamily Evolution in the platyrrhine Three-Family Clade of Cebidae, Callithrichidae, and Aotidae
2023
genomic evolution,
primate genetics,
alu elements,
evolutionary biology,
phylogenetics
A community effort in SARS-CoV-2 drug discovery
2023
drug discovery,
sars-cov-2,
community effort,
viral research,
collaborative research
GraffiTE: a Unified Framework to Analyze Transposable Element Insertion Polymorphisms using Genome-graphs
2023
transposable elements,
genome-graphs,
polymorphisms,
genomic analysis,
bioinformatics
WAS IT A MATch I SAW? Approximate palindromes lead to overstated false match rates in benchmarks using reversed sequences
2023
bioinformatics,
genomics,
sequence analysis,
pattern matching,
data benchmarking
An FPGA-based hardware accelerator supporting sensitive sequence homology filtering with profile hidden Markov models
2023
fpga-based hardware,
accelerator,
sequence homology,
profile hidden markov models,
filtering
VIBES: A Workflow for Annotating and Visualizing Viral Sequences Integrated into Bacterial Genomes
2023
bioinformatics,
genomics,
viral ecology,
data visualization,
microbiology
DISCO: A deelearning ensemble for uncertainty-aware segmentation of acoustic signals
2023
deep learning,
acoustic signals,
segmentation,
uncertainty-aware,
ensemble learning