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Hongxu Ding
Member of the Graduate Faculty | Assistant Professor, Translational Pharmacogenomics
Pharmacy Practice and Science
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Overview
Research
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Collaboration
(11)
Hao Zhang
Mutual work: 1 Proposal
Collaboration Details
Michael Fallon
Mutual work: 1 Proposal
Collaboration Details
Anne Cress
Mutual work: 2 Proposals
Collaboration Details
Jason Karnes
Mutual work: 1 Proposal
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Hendrikus Granzier
Mutual work: 3 Proposals
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Grants
(2)
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Publications
(24)
Recent
Training data diversity enhances the basecalling of novel RNA modification-induced nanopore sequencing readouts
2025
rna modification,
nanopore sequencing
A spatiotemporal and machine-learning platform facilitates the manufacturing of hPSC-derived esophageal mucosa
2025
biomedical engineering,
machine learning,
tissue engineering,
spatiotemporal modeling,
manufacturing optimization
Single-cell signatures identify microenvironment factors in tumors associated with patient outcomes
2024
tumor microenvironment,
single-cell analysis,
patient outcomes,
cancer research,
biomarkers
Adapting nanopore sequencing basecalling models for modification detection via incremental learning and anomaly detection
2024
nanopore sequencing,
anomaly detection
Single Cell Analysis of Lung Lymphatic Endothelial Cells and Lymphatic Responses during Influenza Infection
2024
lung,
lymphatic system,
influenza,
single-cell analysis,
endothelial cells
β-cell Jagged1 is sufficient but not necessary for islet Notch activity and insulin secretory defects in obese mice
2024
β-cell function,
notch signaling,
insulin secretion,
obesity,
islet function
The manatee variational autoencoder model for predicting gene expression alterations caused by transcription factor perturbations
2024
gene expression,
transcription factor,
predictive model,
bioinformatics,
machine learning
Genetic and pharmacologic inhibition of ALDH1A3 as a treatment of cell failure
2023
genetic,
pharmacologic,
treatment
E2F1 Mediates SOX17 Deficiency-Induced Pulmonary Hypertension
2023
e2f1,
sox17,
pulmonary hypertension,
mediation,
deficiency
Concerted modification of nucleotides at functional centers of the ribosome revealed by single-molecule RNA modification profiling
2022
ribosome,
rna modification,
nucleotide modification,
single-molecule profiling,
functional centers
