KMap
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Grants
- NRT-URoL: BRIDGES - Building Resources for InterDisciplinary training in Genomic and Ecosystem Sciences
Key Personnel (KP)
2020
$3.0M
Active - CIBR: BBSRC: PanOryza: Globally Coordinated Genomes, Proteomes and Pathways for Rice
Principal Investigator (PI)
2020
$286.9K
Active - Reference-Quality Drosophila Genome Assemblies for Evolutionary Analysis of Previously Inaccessible Genomic Regions
Principal Investigator (PI)
2016
$2.3M
- Emerging Technologies Opportunity Program - Plant Genomics Capabilities
Principal Investigator (PI)
2016
$1.2M
- Generate and Deliver Two Reference Genome Sequences for Two O. Sativa ssp. Indica Accessions: Minghui63 and Zhenshan97
Principal Investigator (PI)
2014
$1.0M
- AXA Chair in Genome Biology and Evolutionary Genomics
Principal Investigator (PI)
2014
$222.0K
- 12th International Symposium on Rice Functional Genomics
Principal Investigator (PI)
2014
$10.0K
- Emerging Technologies Opportunity Program
Principal Investigator (PI)
2013
$500.0K
- CPGS Oryza Genome Evolution
Principal Investigator (PI)
2010
$9.9M
- Borlaug Malaysia (R. Badrun)
Co-Investigator (COI)
2010
$17.7K
News
- $3M Grant Helps Students Bridge Sciences to Solve the World's Biggest Problems
2020
- ABOR Confirms Five New Regents' Professors at UA
2019
- Evolutionary Biology: It's Not Just for Textbooks Anymore
2014
- UA's Rice Symposium Tackles 'People Question'
2014
- Generating a Genome to Feed the World: UA-Led Team Decodes African Rice
2014
- UA Scientists Help Decipher Origin of Flowers
2013
- A Living Desert Underground
2013
- UA Science Lecture Series: Genomics Now
2013
- 36 High School Students Land Research Internships at UA
2012
- UA Geneticists Help Make Tomato Genome an Open Book
2012
- UA Geneticists Help Solve Barley Genome Puzzle
2012
- ‘Unofficial 100th KEYS Student' has a Knack for Research
2011
- 24 High School Students Land Research Internships at UA
2011
- AAAS to Honor Two UA Faculty Members
2011
- UA-Led Group Awarded $9.9M to Develop ‘Super Rice’
2010
- Regulation of Early Endosperm Development in Maize
2009
- Top High School Students to Perform Scientific Research at UA
2009
- Researchers to Sequence West African Rice Strain
2009
- Scientists at UA, Collaborating Institutions Decode Maize Genome
2009
- UA Researchers Studying Little-Known Genetic Sequences
2008
- The Force Behind 'WaveLengths'
2008
- UA Faculty Win State Biotech Awards
2008
- Arizona Public Media Launches New Series
2008
- UA Researchers Help Unlock the Genetic Secrets of Corn
2008
- Innovation Day Celebrates Technology and Research Achievements
2008
- Top Tucson High School Students in UA Labs This Summer
2008
- TRIF Funding at the UA: UA First in Arizona to Install 'Second-Generation' DNA Sequencer
2007
- Fly Consortium Uncovers Swarm of Novel Findings about Genomic Evolution, Function
2007
- Grant to UA Makes Kartchner Caverns a Microbial Observatory
2006
- USS Arizona Bell Rings to Honor Outstanding Achievement
2005
- Revelations of Rice
2005
- International Rice Functional Genomics Meeting in Tucson Nov. 15-17
2004
- International Rice Functional Genomics Meeting in Tucson Nov. 15-17
2004
- Rod Wing Receives 2004 USDA Honor
2004
- Key Rice Chromosome Decoded by UA Scientist, Colleagues
2003
- UA Contributes to International Rice Genome Sequencing
2003
- Unlocking the Genetic Codes of Maize and Rice
2003
- UA Attracts Top Plant Scientist
2002
- Institute for Biomedical Science and Biotechnology Helping To Attract Outstanding Faculty
2002
- Arizona Universities to Compete for Biomedical Consortium
2002
- Year in Review 2002: Agriculture and Life Sciences
2002
- Outstanding Faculty Heading to UA on Strength of New Biotech Center
2002
Publications (317)
- What lies behind a fruit crop variety name? A case study of the barnī date palm from al‐‘Ulā oasis, Saudi Arabia
2023
- The gyrfalcon (Falcon rusticolus) genome
2023
- An improved genome assembly of the saguaro cactus (Carnegiea gigantea(Engelm.) Britton & Rose)
2023
- The International Oryza Map Alignment Project (IOMAP): the Americas—past achievements and future directions
2023
- Supplemental Material for Zuccolo et al., 2022
2023
- Multi-omics resources for targeted agronomic improvement of pigmented rice
2023
- Rice Gene Index (RGI): a comprehensive pan-genome database for comparative and functional genomics of Asian rice.
2023
- Pan-genome inversion index reveals evolutionary insights into the subpopulation structure of Asian rice (Oryza sativa)
2022
- Gene fusion as an important mechanism to generate new genes in the genus Oryza
2022
- Genome assembly of the JD17 soybean provides a new reference genome for Comparative genomics
2022
- Rice domestication.
2022
- Two gap-free reference genomes and a global view of the centromere architecture in rice
2021
- Two Gap-free Reference Genomes and a Global View of the Centromere Architecture in Rice.
2021
- Long-read genome sequencing of bread wheat facilitates disease resistance gene cloning
2021
- Evolution and diversification of reproductive phased small interfering RNAs in Oryza species
2021
- The chromosome-scale reference genome of safflower (Carthamus tinctorius) provides insights into linoleic acid and flavonoid biosynthesis
2021
- Genomic mechanisms of climate adaptation in polyploid bioenergy switchgrass
2021
- Author Correction: Mitochondrial plastid DNA can cause DNA barcoding paradox in plants
2021
- A route to de novo domestication of wild allotetraploid rice.
2021
- Starch Synthesis-Related Genes (SSRG) Evolution in the Genus Oryza
2021
- Mitochondrial plastid DNA can cause DNA barcoding paradox in plants
2020
- Evolution and Diversity of the Wild Rice Oryza officinalis Complex, across Continents, Genome Types, and Ploidy Levels
2020
- A platinum standard pan-genome resource that represents the population structure of Asian rice
2020
- Fish10K Pilot Project Data
2020
- Evolutionary Dynamics of Abundant 7-bp Satellites in the Genome of Drosophila virilis
2020
- Potential of Platinum Standard Reference Genomes to Exploit Natural Variation in the Wild Relatives of Rice
2020
- The gap-free rice genomes provide insights for centromere structure and function exploration and graph-based pan-genome construction
2020
- A genome assembly and the somatic genetic and epigenetic mutation rate in a wild long-lived perennial Populus trichocarpa
2020
- Initial data release and announcement of the 10,000 Fish Genomes Project (Fish10K)
2020
- Structural variants in 3000 rice genomes
2019
- Genome sequence of the model rice variety KitaakeX
2019
- The somatic genetic and epigenetic mutation rate in a wild long-lived perennial Populus trichocarpa
2019
- A chromosome-scale assembly of allotetraploid Brassica juncea (AABB) elucidates comparative architecture of the A and B genomes
2019
- Rapid evolution of protein diversity by de novo origination in Oryza
2019
- Genome-wide association mapping of date palm fruit traits
2019
- Twelve Platinum-Standard Reference Genomes Sequences (PSRefSeq) that complete the full range of genetic diversity of Asian rice
2019
- Machine Learning Reveals Spatiotemporal Genome Evolution in Asian Rice Domestication
2019
- The Genomics of Species Provides Insights into Rice Domestication and Heterosis
2019
- Comparison of Oryza sativa and Oryza brachyantha Genomes Reveals Selection-Driven Gene Escape from the Centromeric Regions
2018
- Erratum to: Genomes of 13 domesticated and wild rice relatives highlight genetic conservation, turnover and innovation across the genus Oryza (Nature Genetics, (2018), 50, 2, (285-296), 10.1038/s41588-018-0040-0)
2018
- Progress in single-access information systems for wheat and rice crop improvement
2018
- Genome and evolution of the shade-requiring medicinal herb Panax ginseng
2018
- Genomic variation in 3,010 diverse accessions of Asian cultivated rice
2018
- The rice genome revolution: From an ancient grain to Green Super Rice
2018
- Genotyping by sequencing of rice interspecific backcross inbred lines identifies QTLs for grain weight and grain length
2018
- Genomes of 13 domesticated and wild rice relatives highlight genetic conservation, turnover and innovation across the genus Oryza
2018
- Genetic control of seed shattering during African rice domestication
2018
- The rice paradox: Multiple origins but single domestication in Asian rice
2017
- Publisher correction: Young inversion with multiple linked QTLs under selection in a hybrid zone
2017
- A single-nucleotide polymorphism causes smaller grain size and loss of seed shattering during African rice domestication
2017
- Evolutionary analysis of the SUB1 locus across the Oryza genomes
2017
- Rice SNP-seek database update: new SNPs, indels, and queries
2017
- Selection in a hybrid zone: evidence for linked QTLs in a young inversion
2017
- Genetic variation for domestication-related traits revealed in a cultivated rice, Nipponbare (Oryza sativa ssp. japonica) × ancestral rice, O. nivara, mapping population
2017
- The asparagus genome sheds light on the origin and evolution of a young Y chromosome
2017
- Young inversion with multiple linked QTLs under selection in a hybrid zone
2017
- Extensive gene tree discordance and hemiplasy shaped the genomes of North American columnar cacti
2017
- Aflatoxin-free transgenic maize using host-induced gene silencing
2017
- Extensive sequence divergence between the reference genomes of two elite indica rice varieties Zhenshan 97 and Minghui 63
2016
- Evolution of plant genome architecture
2016
- DNA transposon activity is associated with increased mutation rates in genes of rice and other grasses
2016
- DNA methylation changes facilitated evolution of genes derived from Mutator-like transposable elements
2016
- Host induced gene silencing inhibits aflatoxin production in transgenic maize when challenged with Aspergillus
2016
- Tracing ancestor rice of Suriname Maroons back to its African origin
2016
- Genome puzzle master (GPM): an integrated pipeline for building and editing pseudomolecules from fragmented sequences
2016
- Building two indica rice reference genomes with PacBio long-read and Illumina paired-end sequencing data
2016
- Sequencing of Australian wild rice genomes reveals ancestral relationships with domesticated rice
2016
- The Cardamine hirsuta genome offers insight into the evolution of morphological diversity
2016
- The Dark Side of the Genome: Revealing the Native Transposable Element/Repeat Content of Eukaryotic Genomes
2016
- Development and validation of cross-transferable and polymorphic DNA markers for detecting alien genome introgression in Oryza sativa from Oryza brachyantha
2016
- The impact and origin of copy number variations in the Oryza species
2016
- Genome and Comparative Transcriptomics of African Wild Rice Oryza longistaminata Provide Insights into Molecular Mechanism of Rhizomatousness and Self-Incompatibility
2015
- Complete chloroplast and ribosomal sequences for 30 accessions elucidate evolution of Oryza AA genome species
2015
- Harvesting rice's dispensable genome
2015
- Recurrent sequence exchange between homeologous grass chromosomes
2015
- Transposons play an important role in the evolution and diversification of centromeres among closely related species
2015
- RiTE database: a resource database for genus-wide rice genomics and evolutionary biology
2015
- Exceptional reduction of the plastid genome of saguaro cactus (Carnegiea gigantea): Loss of the ndh gene suite and inverted repeat
2015
- Red clover (Trifolium pratense L.) draft genome provides a platform for trait improvement
2015
- Sequencing of 15 622 gene-bearing BACs clarifies the gene-dense regions of the barley genome
2015
- Global genomic diversity of Oryza sativa varieties revealed by comparative physical mapping
2014
- Disentangling methodological and biological sources of gene tree discordance on Oryza (Poaceae) chromosome 3
2014
- Endogenous florendoviruses are major components of plant genomes and hallmarks of virus evolution
2014
- The genome sequence of African rice (Oryza glaberrima) and evidence for independent domestication
2014
- Comparative BAC-based physical mapping of Oryza sativa ssp. indica var. 93-11 and evaluation of the two rice reference sequence assemblies
2014
- A reference genome for common bean and genome-wide analysis of dual domestications
2014
- Making a living while starving in the dark: Metagenomic insights into the energy dynamics of a carbonate cave
2014
- Fifteen million years of evolution in the Oryza genus shows extensive gene family expansion
2014
- BAC-end sequences analysis provides first insights into coffee (Coffea canephora P.) genome composition and evolution
2013
- The Amborella genome and the evolution of flowering plants
2013
- Aluminum tolerance in maize is associated with higher MATE1 gene copy number
2013
- Whole-genome sequencing of Oryza brachyantha reveals mechanisms underlying Oryza genome evolution
2013
- The reference genome of the halophytic plant Eutrema salsugineum
2013
- Grain quality
2013
- The International Oryza Map Alignment Project: development of a genus-wide comparative genomics platform to help solve the 9 billion-people question
2013
- Preface
2013
- Perspective rice 2020 revised: An urgent call to mobilize and coordinate rice functional genomics research worldwide
2013
- The wild relative of Rice: Genomes and genomics
2013
- Detection and correction of assembly errors of rice Nipponbare reference sequence
2013
- BAC library development and clone characterization for dormancy-responsive DREB4A, DAM, and FT from leafy spurge (Euphorbia esula) identifies differential splicing and conserved promoter motifs
2013
- Evolution of a complex locus for terpene biosynthesis in Solanum
2013
- Genetics and genomics of rice
2013
- Genome studies and molecular genetics: Understanding the functional genome based on the rice model
2013
- Oil palm genome sequence reveals divergence of interfertile species in Old and New worlds
2013
- Profiling bacterial diversity and taxonomic composition on speleothem surfaces in Kartchner Caverns, AZ
2013
- Genomic resources for gene discovery, functional genome annotation, and evolutionary studies of maize and its close relatives
2013
- Ginger and turmeric expressed sequence tags identify signature genes for rhizome identity and development and the biosynthesis of curcuminoids, gingerols and terpenoids
2013
- High occurrence of functional new chimeric genes in survey of rice chromosome 3 short arm genome sequences
2013
- Assembly and validation of the genome of the nonmodel basal angiosperm Amborella
2013
- The tomato genome sequence provides insights into fleshy fruit evolution
2012
- A BAC library of the SP80-3280 sugarcane variety (saccharum sp.) and its inferred microsynteny with the sorghum genome
2012
- Life at the hyperarid margin: Novel bacterial diversity in arid soils of the Atacama Desert, Chile
2012
- Integration of the draft sequence and physical map as a framework for genomic research in soybean (glycine max (l.) merr.) and wild soybean (glycine soja sieb. and zucc.)
2012
- Comparative Sequence Analysis of the Ghd7 Orthologous Regions Revealed Movement of Ghd7 in the Grass Genomes
2012
- Ortholog alleles at Xa3/Xa26 locus confer conserved race-specific resistance against xanthomonas oryzae in rice
2012
- The genomes that make tomatoes
2012
- A physical, genetic and functional sequence assembly of the barley genome
2012
- Dynamic intra-japonica subspecies variation and resource application
2012
- Construction, characterization, and preliminary BAC-end sequence analysis of a bacterial artificial chromosome library of the tea plant (Camellia sinensis)
2011
- Molecular and Cytological Characterization of Centromeric Retrotransposons in a Wild Relative of Rice, Oryza granulata
2011
- A physical map for the Amborella trichopoda genome sheds light on the evolution of angiosperm genome structure
2011
- Advancing Eucalyptus genomics: Identification and sequencing of lignin biosynthesis genes from deep-coverage BAC libraries
2011
- The 19 genomes of Drosophila: A BAC library resource for genus-wide and genome-scale comparative evolutionary research
2011
- Gene-based SSR markers for common bean (Phaseolus vulgaris L.) derived from root and leaf tissue ESTs: An integration of the BMc series
2011
- Doubling genome size without polyploidization: Dynamics of retrotransposition-driven genomic expansions in Oryza australiensis, a wild relative of rice (Genome Research (2006) 16, (1262-1269))
2011
- The genome of Theobroma cacao
2011
- Conservation and purifying selection of transcribed genes located in a rice centromere
2011
- LysM-type mycorrhizal receptor recruited for rhizobium symbiosis in nonlegume Parasponia
2011
- Exceptional lability of a genomic complex in rice and its close relatives revealed by interspecific and intraspecific comparison and population analysis
2011
- Long-range and targeted ectopic recombination between the two homeologous chromosomes 11 and 12 in Oryza species
2011
- Orthologous comparisons of the Hd1 region across genera reveal hd1 gene lability within diploid oryza species and disruptions to microsynteny in sorghum
2010
- Phylogenomic analysis of BAC-end sequence libraries in Oryza (Poaceae)
2010
- Extensive gene conversion drives the concerted evolution of paralogous copies of the SRY gene in European rabbits
2010
- Genomic structure and evolution of the Pi2/9 locus in wild rice species
2010
- An integrated physical, genetic and cytogenetic map of Brachypodium distachyon, a model system for grass research
2010
- The Oryza BAC resource: A genus-wide and genome scale tool for exploring rice genome evolution and leveraging useful genetic diversity from wild relatives
2010
- Genome sequence of the palaeopolyploid soybean
2010
- Spatio-temporal patterns of genome evolution in allotetraploid species of the genus Oryza
2010
- The future of rice genomics: Sequencing the collective Oryza genome
2010
- Rice structural variation: A comparative analysis of structural variation between rice and three of its closest relatives in the genus Oryza
2010
- Erratum: Genome sequence of the palaeopolyploid soybean (Nature (2010) 463 (178-183))
2010
- Dynamic Oryza genomes: Repetitive DNA sequences as genome modeling agents
2010
- Australian Oryza: Utility and conservation
2010
- A draft physical map of a D-genome cotton species (Gossypium raimondii)
2010
- Assessing the extent of substitution rate variation of retrotransposon Long Terminal Repeat sequences in Oryza sativa and Oryza glaberrima
2010
- De novo next generation sequencing of plant genomes
2009
- Hamiltonella defensa, genome evolution of protective bacterial endosymbiont from pathogenic ancestors
2009
- A single molecule scaffold for the maize genome
2009
- A lineage-specific centromere retrotransposon in Oryza brachyantha
2009
- Human gut microbiota in obesity and after gastric bypass
2009
- Comparative sequence analysis of the SALT OVERLY SENSITIVE1 orthologous region in Thellungiella halophila and Arabidopsis thaliana
2009
- Species trees from highly incongruent gene trees in rice
2009
- Comparative sequence analysis of MONOCULM1-orthologous regions in 14 Oryza genomes
2009
- Detailed analysis of a contiguous 22-Mb region of the maize genome
2009
- The physical and genetic framework of the maize B73 genome
2009
- The B73 maize genome: Complexity, diversity, and dynamics
2009
- A fruitful outcome to the papaya genome project
2008
- Construction of an Amaranthus hypochondriacus bacterial artificial chromosome library and genomic sequencing of herbicide target genes
2008
- A versatile transposon-based activation tag vector system for functional genomics in cereals and other monocot plants
2008
- A phylogenetic analysis of indel dynamics in the cotton genus
2008
- Construction, alignment and analysis of twelve framework physical maps that represent the ten genome types of the genus Oryza
2008
- The subtelomere of Oryza sativa chromosome 3 short arm as a hot bed of new gene origination in rice
2008
- The promoter signatures in rice LEA genes can be used to build a co-expressing LEA gene network
2008
- The Rice Annotation Project Database (RAP-DB): 2008 update
2008
- Dynamic evolution of oryza genomes is revealed by comparative genomic analysis of a genus-wide vertical data set
2008
- Methylation-sensitive linking libraries enhance gene-enriched sequencing of complex genomes and map DNA methylation domains
2008
- Evidence of multiple horizontal transfers of the long terminal repeat retrotransposon RIRE1 within the genus Oryza
2008
- The Amborella genome: An evolutionary reference for plant biology
2008
- Microsatellite discovery from BAC end sequences and genetic mapping to anchor the soybean physical and genetic maps
2008
- Rapid and differential proliferation of the Ty3-Gypsy LTR retrotransposon Atlantys in the genus Oryza
2008
- Diploid/polyploid syntenic shuttle mapping and haplotype-specific chromosome walking toward a rust resistance gene (Bru1) in highly polyploid sugarcane (2n ∼ 12x ∼ 115)
2008
- Rice genome sequence: The foundation for understanding the genetic systems
2007
- RL-SAGE and microarray analysis of the rice transcriptome after Rhizoctonia solani infection
2007
- Transposable element distribution, abundance and role in genome size variation in the genus Oryza
2007
- Evolutionary history and positional shift of a rice centromere
2007
- Plant centromere organization: a dynamic structure with conserved functions
2007
- Magnaporthe grisea infection triggers RNA variation and antisense transcript expression in rice
2007
- Comparative physical mapping between Oryza sativa (AA genome type) and O. punctata (BB genome type)
2007
- The barley ERF-type transcription factor HvRAF confers enhanced pathogen resistance and salt tolerance in Arabidopsis
2007
- Changes in regulation of a transcription factor lead to autogamy in cultivated tomatoes
2007
- Efficacy of clone fingerprinting methodologies
2007
- Evolutionary dynamics of an ancient retrotransposon family provides insights into evolution of genome size in the genus Oryza
2007
- Physical and genetic structure of the maize genome reflects its complex evolutionary history
2007
- Curated genome annotation of Oryza sativa ssp. japonica and comparative genome analysis with Arabidopsis thaliana: The Rice Annotation Project
2007
- The oryza map alignment project (OMAP): A new resource for comparative genome studies within oryza
2007
- Microcolinearity and genome evolution in the AdhA region of diploid and polyploid cotton (Gossypium)
2007
- Evolution of genes and genomes on the Drosophila phylogeny
2007
- Development of a BAC library for yellow-poplar (Liriodendron tulipifera) and the identification of genes associated with flower development and lignin biosynthesis
2007
- A global assembly of cotton ESTs
2006
- Uneven chromosome contraction and expansion in the maize genome
2006
- Two highly representative rice BAC libraries of japonica cv Tainung 67 suitable for rice structural and functional genomic research
2006
- Deep and comparative analysis of the mycelium and appressorium transcriptomes of Magnaporthe grisea using MPSS, RL-SAGE, and oligoarray methods
2006
- A bacterial artificial chromosome library for Biomphalaria glabrata, intermediate snail host of Schistosoma mansoni
2006
- Integration of hybridization-based markers (overgos) into physical maps for comparative and evolutionary explorations in the genus Oryza and in Sorghum
2006
- MGOS: A resource for studying Magnaporthe grisea and Oryza sativa interactions
2006
- New resources for marine genomics: Bacterial artificial chromosome libraries for the eastern and pacific oysters (Crassostrea virginica and C. gigas)
2006
- The Oryza bacterial artificial chromosome library resource: construction and analysis of 12 deep-coverage large-insert BAC libraries that represent the 10 genome types of the genus Oryza
2006
- Differential lineage-specific amplification of transposable elements is responsible for genome size variation in Gossypium
2006
- Erratum to "Utilization of a zebra finch BAC library to determine the structure of an avian androgen receptor genomic region" [Genomics 87 (2006) 181-190] (DOI:10.1016/j.ygeno.2005.09.005)
2006
- Construction of a nurse shark (Ginglymostoma cirratum) bacterial artificial chromosome (BAC) library and a preliminary genome survey
2006
- Utilization of a zebra finch BAC library to determine the structure of an avian androgen receptor genomic region
2006
- Doubling genome size without polyploidization: Dynamics of retrotransposition-driven genomic expansions in Oryza australiensis, a wild relative of rice
2006
- Genomic and genetic characterization of rice Cen3 reveals extensive transcription and evolutionary implications of a complex centromere
2006
- Single nucleotide polymorphisms and insertion-deletions for genetic markers and anchoring the maize fingerprint contig physical map
2006
- Whole-genome validation of high-information-content fingerprinting
2005
- The Oryza map alignment project: The golden path to unlocking the genetic potential of wild rice species
2005
- Random sheared fosmid library as a new genomic tool to accelerate complete finishing of rice (Oryza sativa spp. Nipponbare) genome sequence: sequencing of gap-specific fosmid clones uncovers new euchromatic portions of the genome
2005
- Construction of a bacterial artificial chromosome library from the spikemoss Selaginella moellendorffii: A new resource for plant comparative genomics
2005
- Sorghum expressed sequence tags identify signature genes for drought, pathogenesis, and skotomorphogenesis from a milestone set of 16,801 unique transcripts
2005
- Sequence, annotation, and analysis of synteny between rice chromosome 3 and diverged grass species. The Rice Chromosome 3 Sequencing Consortium
2005
- Comparative physical mapping links conservation of microsynteny to chromosome structure and recombination in grasses
2005
- In-depth sequence analysis of the tomato chromosome 12 centromeric region: Identification of a large CAA block and characterization of pericentromere retrotranposons
2005
- The map-based sequence of the rice genome
2005
- Efficient insertional mutagenesis in rice using the maize En/Spm elements
2005
- Structure and architecture of the maize genome
2005
- Whole genome sequencing: Methodology and progress in cereals
2005
- Toward closing rice telomere gaps: Mapping and sequence characterization of rice subtelomere regions
2005
- Candidate gene database and transcript map for peach, a model species for fruit trees
2005
- Plant Molecular Biology: Editorial
2005
- The sequence of rice chromosomes 11 and 12, rich in disease resistance genes and recent gene duplications
2005
- Large-scale identification of expressed sequence tags involved in rice and rice blast fungus interaction
2005
- A 3347-Locus Genetic Recombination Map of Sequence-Tagged Sites Reveals Features of Genome Organization, Transmission and Evolution of Cotton (Gossypium)
2004
- Comparative population genetics of the panicoid grasses: Sequence polymorphism, linkage disequilibrium and selection in a diverse sample of Sorghum bicolor
2004
- Localization of jointless-2 gene in the centromeric region of tomato chromosome 12 based on high resolution genetic and physical mapping
2004
- Sequence analysis of the long arm of rice chromosome 11 for rice-wheat synteny
2004
- Structural features of the rice chromosome 4 centromere
2004
- Bacterial artificial chromosome (BAC) library resource for positional cloning of pest and disease resistance genes in cassava (Manihot esculenta Crantz)
2004
- The Ashbya gossypii Genome as a Tool for Mapping the Ancient Saccharomyces cerevisiae Genome
2004
- A new resource for cereal genomics: 22K Barley GeneChip comes of age
2004
- Incongruent patterns of local and global genome size evolution in cotton
2004
- Sequence composition and genome organization of maize
2004
- BAC end sequences and a physical map reveal transposable element content and clustering patterns in the genome of Magnaporthe grisea
2004
- Anchoring 9,371 maize expressed sequence tagged unigenes to the bacterial artificial chromosome contig map by two-dimensional overgo hybridization
2004
- Functional genomics of cell elongation in developing cotton fibers
2004
- Comparison of peach and Arabidopsis genomic sequences: Fragmentary conservation of gene neighborhoods
2003
- In-depth view of structure, activity, and evolution of rice chromosome 10
2003
- Rate variation among nuclear genes and the age of polyploidy in Gossypium
2003
- Construction and utility of 10-kb libraries for efficient clone-gap closure for rice genome sequencing
2003
- An improved method for plant BAC library construction.
2003
- New genomic resources for the honey bee (Apis mellifera L.): Development of a deep-coverage BAC library and a preliminary STC database
2002
- Pulsed-field gel electrophoresis for long-range restriction mapping.
2002
- An integrated physical and genetic map of the rice genome
2002
- Genetic, physical, and informatics resources for maize. On the road to an integrated map
2002
- Physical mapping, BAC-end sequence analysis, and marker tagging of the soilborne nematicidal bacterium, Pseudomonas synxantha BG33R
2002
- Dasheng: A recently amplified nonautonomous long terminal repeat element that is a major component of pericentromeric regions in rice
2002
- Genome dynamics and evolution of the Mla (powdery mildew) resistance locus in barley
2002
- MagnaportheDB: A federated solution for integrating physical and genetic map data with BAC end derived sequences for the rice blast fungus Magnaporthe grisea
2002
- A fine physical map of the rice chromosome 4
2002
- Resolution of fluorescence in-situ hybridization mapping on rice mitotic prometaphase chromosomes, meiotic pachytene chromosomes and extended DNA fibers
2002
- Construction and characterization of a deep-coverage bacterial artificial chromosome library for maize
2002
- Construction of BAC libraries from two apomictic grasses to study the microcolinearity of their apospory-specific genomic regions
2002
- Access to the maize genome: an integrated physical and genetic map.
2002
- A draft sequence of the rice genome (Oryza sativa L. ssp. japonica)
2002
- Toward integration of comparative genetic, physical, diversity, and cytomolecular maps for grasses and grains, using the sorghum genome as a foundation
2001
- High-resolution pachytene chromosome mapping of bacterial artificial chromosomes anchored by genetic markers reveals the centromere location and the distribution of genetic recombination along chromosome 10 of rice
2001
- Sequence and analysis of the tomato JOINTLESS locus
2001
- Toward a cytological characterization of the rice genome
2001
- Development of genomic resources for cotton (Gossypium hirsutum L.): BAC library construction, preliminary STC analysis, and identification of clones associated with fiber development
2001
- Construction of a 1.2-Mb contig including the citrus tristeza virus resistance gene locus using a bacterial artificial chromosome library of Poncirus trifoliata (L.) Raf.
2001
- Complete nucleotide sequence and organization of the atrazine catabolic plasmid pADP-1 from Pseudomonas sp. strain ADP
2001
- Chromosome landing at the bacterial blight resistance gene Xa4 locus using a deep coverage rice BAC library
2001
- A marker-dense physical map of the Bradyrhizobium japonicum genome
2001
- Melon bacterial artificial chromosome (BAC) library construction using improved methods and identification of clones linked to the locus conferring resistance to melon Fusarium wilt (Fom-2)
2001
- Grape (Vitis vinifera L.) BAC library construction, preliminary STC analysis, and identification of clones associated with flavonoid and stilbene biosynthesis
2001
- Evaluation of genetic variation in the daylily (Hemerocallis spp.) using AFLP markers
2001
- A framework for sequencing the rice genome
2001
- Locus-specific contig assembly in highly-duplicated genomes, using the BAC-RF method.
2000
- A bacterial artificial chromosome library for barley (Hordeum vulgare L.) and the identification of clones containing putative resistance genes
2000
- Physical mapping of the barley stem rust resistance genie rpg4
2000
- JOINTLESS is a MADS-box gene controlling tomato flower abscission zone development
2000
- Erratum: The Mla (powdery mildew) resistance cluster is associated with three NBS-LRR gene families and suppressed recombination within a 240-kb DNA interval on chromosome 5S (1HS) of Barley (Genetics 153 (1929-1948))
2000
- Rice Transposable elements: A survey of 73,000 sequence-tagged-connectors
2000
- Anchoring of rice BAC clones to the rice genetic map in silico
2000
- A deep-coverage tomato BAC library and prospects toward development of an STC framework for genome sequencing
2000
- Genetic mapping of jointless-2 to tomato chromosome 12 using RFLP and RAPD markers
2000
- A new approach for the identification and cloning of genes: the pBACwich system using Cre/lox site-specific recombination
2000
- A bacterial artificial chromosome library for sugarcane
1999
- Construction and characterization of a bacterial artificial chromosome (BAC) library for the A genome of wheat
1999
- Physical map and gene survey of the Ochrobactrum anthropi genome using bacterial artificial chromosome contigs
1999
- The Mla (powdery mildew) resistance cluster is associated with three NBS-LRR gene families and suppressed recombination within a 240-kb DNA interval on chromosome 5S (1HS) of barley
1999
- A bacterial artificial chromosome library for soybean PI 437654 and identification of clones associated with cyst nematode resistance
1999
- Tetraploid nature of Sorghum bicolor (L.) Moench
1998
- Cloning and characterization of a centromere-specific repetitive DNA element from Sorghum bicolor
1998
- Gene expression induced by physical impedance in maize roots
1998
- Physical mapping of the liguleless linkage group in sorghum bicolor using rice RFLP-selected sorghum BACs
1998
- A rapid procedure for the isolation of C sub 0 /sub t-1 DNA from plants
1997
- A rapid procedure for the isolation of C<inf>0</inf>t-1 DNA from plants
1997
- FISH of a maize sh2-selected sorghum BAC to chromosomes of Sorghum bicolor
1997
- Physical mapping of the rice genome with BACs
1997
- A large-insert (130 kbp) bacterial artificial chromosome library of the rice blast fungus Magnaporthe grisea: Genome analysis, contig assembly, and gene cloning
1997
- Microcolinearity in sh2-homologous regions of the maize, rice, and sorghum genomes
1997
- Construction and characterization of two rice Bacterial Artificial Chromosome libraries from the parents of a permanent recombinant inbred mapping population
1996
- A conserved repetitive DNA element located in the centromeres of cereal chromosomes
1996
- Gene identification in a complex chromosomal continuum by local genomic cross-referencing
1996
- The Hybaid Lecture. Microcollinearity and segmental duplication in the evolution of grass nuclear genomes.
1996
- Comparative gene expression in sexual and apomictic ovaries of Pennisetum ciliare (L.) Link
1996
- Construction and characterization of a bacterial artificial chromosome library of Arabidopsis thaliana
1995
- Fluorescent in situ hybridization of a bacterial artificial chromosome
1995
- Cloning and characterization of the majority of repetitive DNA in cotton (Gossypium L.)
1995
- Construction and characterization of a bovine bacterial artificial chromosome library
1995
- Preparation of megabase-size DNA from plant nuclei
1995
- Isolation of megabase-size DNA from sorghum and applications for physical mapping and bacterial and yeast artificial chromosome library construction
1995
- A simple method for isolation of megabase DNA from cotton
1994
- Construction and characterization of a bacterial artificial chromosome library of Sorghum bicolor
1994
- Map-based cloning in crop plants: tomato as a model system II. Isolation and characterization of a set of overlapping yeast artificial chromosomes encompassing the jointless locus
1994
- A detailed RFLP map of Sorghum bicolor X S.propinquum, suitable for high-density mapping, suggests ancestral duplication of Sorghum chromosomes or chromosomal segments
1994
- Map-based cloning in crop plants. Tomato as a model system: I. Genetic and physical mapping of jointless
1994
- Pcr amplification from single seeds, facilitating DNA marker-assisted breeding
1993
- Genome mapping in plants
1993
- An improved method of plant megabase DNA isolation in agarose microbeads suitable for physical mapping and YAC cloning
1993
- High density molecular linkage maps of the tomato and potato genomes
1992
- Isolation of molecular markers from specific chromosomal intervals using DNA pools from existing mapping populations
1991
- Promoter analysis of genes that are coordinately expressed during pollen development reveals pollen-specific enhancer sequences and shared regulatory elements
1991
- Molecular and genetic characterization of two pollen-expressed genes that have sequence similarity to pectate lyases of the plant pathogen Erwinia
1990
- Isolation and expression of an anther-specific gene from tomato
1989
- Intracellular precursors and secretion of alkaline extracellular protease of Yarrowia lipolytica.
1988
- Integrative transformation of the yeast Yarrowia lipolytica
1985