KMap
Rod Wing earned his PhD in yeast genetics at UC Davis in 1987. He then moved into plant biology, first as a postdoc with Sheila McCormick (USDA-ARS Plant Gene Expression Center) and then with Steve Tanksley (Cornell University). Rod became an Assistant Professor at Texas A&M University in 1991 in the Soil & Crop Sciences Department. There his lab constructed the first plant BAC libraries in 1993/4 for sorghum, Arabidopsis and rice. In 1997 he moved his lab to Clemson University and founded the Clemson University Genomics Institute where he was appointed the Coker Endowed Chair of Plant Molecular Genetics. There his lab developed a BAC-based physical map for the rice genome and led the USA effort to sequence rice chromosomes 3 and 10. In 2002 Rod moved to the University of Arizona and founded the Arizona Genomics Institute. Professor Wing has received numerous appointments and awards including the USDA Secretary’s Honor Award for Superior Service, Group Leader - United States Rice Genome Consortia (2004), the first holder of Bud Antle Endowed Chair of Excellence in Agriculture & Life Science (2005), the Alexander von Humboldt Research Award (2010), the AXA Endowed Chair for Genome Biology and Evolutionary Genomics (2014-2019). In 2019 he was appointed a Regents Professor at the University of Arizona and we elected as a Foreign Fellow of India’s National Academy of Agricultural Sciences in January 2022. Wing's pioneering work on the genome biology of rice and other crop plants and their wild relatives has empowered the agricultural community across the globe to address both fundamental and applied research in pursuit of the 10-billion people question: How can we sustainably grow enough nutritious food to feed the world by 2050 without destroying our planet? Wing’s approach to this question is to identify, understand, and harness the majority of natural variation that already exists in cultivated rice and its wild ancestors, and to use that information to create the next generation of green super crops. Since rice is the most important food crop on the planet, his team is developing new crop varieties that are higher yielding and more nutritious while having a smaller environmental footprint.

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Grants
  • Funding agency logo
    NRT-URoL: BRIDGES - Building Resources for InterDisciplinary training in Genomic and Ecosystem Sciences

    Key Personnel (KP)

    2020

    $3.0M
    Active
  • Funding agency logo
    CIBR: BBSRC: PanOryza: Globally Coordinated Genomes, Proteomes and Pathways for Rice

    Principal Investigator (PI)

    2020

    $286.9K
    Active
  • Funding agency logo
    Reference-Quality Drosophila Genome Assemblies for Evolutionary Analysis of Previously Inaccessible Genomic Regions

    Principal Investigator (PI)

    2016

    $2.3M
  • Funding agency logo
    Emerging Technologies Opportunity Program - Plant Genomics Capabilities

    Principal Investigator (PI)

    2016

    $1.2M
  • Funding agency logo
    Generate and Deliver Two Reference Genome Sequences for Two O. Sativa ssp. Indica Accessions: Minghui63 and Zhenshan97

    Principal Investigator (PI)

    2014

    $1.0M
  • Funding agency logo
    AXA Chair in Genome Biology and Evolutionary Genomics

    Principal Investigator (PI)

    2014

    $222.0K
  • Funding agency logo
    12th International Symposium on Rice Functional Genomics

    Principal Investigator (PI)

    2014

    $10.0K
  • Funding agency logo
    Emerging Technologies Opportunity Program

    Principal Investigator (PI)

    2013

    $500.0K
  • Funding agency logo
    CPGS Oryza Genome Evolution

    Principal Investigator (PI)

    2010

    $9.9M
  • Funding agency logo
    Borlaug Malaysia (R. Badrun)

    Co-Investigator (COI)

    2010

    $17.7K
News
  • $3M Grant Helps Students Bridge Sciences to Solve the World's Biggest Problems

    2020

  • ABOR Confirms Five New Regents' Professors at UA

    2019

  • Evolutionary Biology: It's Not Just for Textbooks Anymore

    2014

  • UA's Rice Symposium Tackles 'People Question'

    2014

  • Generating a Genome to Feed the World: UA-Led Team Decodes African Rice

    2014

  • UA Scientists Help Decipher Origin of Flowers

    2013

  • A Living Desert Underground

    2013

  • UA Science Lecture Series: Genomics Now

    2013

  • 36 High School Students Land Research Internships at UA

    2012

  • UA Geneticists Help Make Tomato Genome an Open Book

    2012

  • UA Geneticists Help Solve Barley Genome Puzzle

    2012

  • ‘Unofficial 100th KEYS Student' has a Knack for Research

    2011

  • 24 High School Students Land Research Internships at UA

    2011

  • AAAS to Honor Two UA Faculty Members

    2011

  • UA-Led Group Awarded $9.9M to Develop ‘Super Rice’

    2010

  • Regulation of Early Endosperm Development in Maize

    2009

  • Top High School Students to Perform Scientific Research at UA

    2009

  • Researchers to Sequence West African Rice Strain

    2009

  • Scientists at UA, Collaborating Institutions Decode Maize Genome

    2009

  • UA Researchers Studying Little-Known Genetic Sequences

    2008

  • The Force Behind 'WaveLengths'

    2008

  • UA Faculty Win State Biotech Awards

    2008

  • Arizona Public Media Launches New Series

    2008

  • UA Researchers Help Unlock the Genetic Secrets of Corn

    2008

  • Innovation Day Celebrates Technology and Research Achievements

    2008

  • Top Tucson High School Students in UA Labs This Summer

    2008

  • TRIF Funding at the UA: UA First in Arizona to Install 'Second-Generation' DNA Sequencer

    2007

  • Fly Consortium Uncovers Swarm of Novel Findings about Genomic Evolution, Function

    2007

  • Grant to UA Makes Kartchner Caverns a Microbial Observatory

    2006

  • USS Arizona Bell Rings to Honor Outstanding Achievement

    2005

  • Revelations of Rice

    2005

  • International Rice Functional Genomics Meeting in Tucson Nov. 15-17

    2004

  • International Rice Functional Genomics Meeting in Tucson Nov. 15-17

    2004

  • Rod Wing Receives 2004 USDA Honor

    2004

  • Key Rice Chromosome Decoded by UA Scientist, Colleagues

    2003

  • UA Contributes to International Rice Genome Sequencing

    2003

  • Unlocking the Genetic Codes of Maize and Rice

    2003

  • UA Attracts Top Plant Scientist

    2002

  • Institute for Biomedical Science and Biotechnology Helping To Attract Outstanding Faculty

    2002

  • Arizona Universities to Compete for Biomedical Consortium

    2002

  • Year in Review 2002: Agriculture and Life Sciences

    2002

  • Outstanding Faculty Heading to UA on Strength of New Biotech Center

    2002

Publications (317)
Recent
  • What lies behind a fruit crop variety name? A case study of the barnī date palm from al‐‘Ulā oasis, Saudi Arabia

    2023

  • The gyrfalcon (Falcon rusticolus) genome

    2023

  • An improved genome assembly of the saguaro cactus (Carnegiea gigantea(Engelm.) Britton & Rose)

    2023

  • The International Oryza Map Alignment Project (IOMAP): the Americas—past achievements and future directions

    2023

  • Supplemental Material for Zuccolo et al., 2022

    2023

  • Multi-omics resources for targeted agronomic improvement of pigmented rice

    2023

  • Rice Gene Index (RGI): a comprehensive pan-genome database for comparative and functional genomics of Asian rice.

    2023

  • Pan-genome inversion index reveals evolutionary insights into the subpopulation structure of Asian rice (Oryza sativa)

    2022

  • Gene fusion as an important mechanism to generate new genes in the genus Oryza

    2022

  • Genome assembly of the JD17 soybean provides a new reference genome for Comparative genomics

    2022

  • Rice domestication.

    2022

  • Two gap-free reference genomes and a global view of the centromere architecture in rice

    2021

  • Two Gap-free Reference Genomes and a Global View of the Centromere Architecture in Rice.

    2021

  • Long-read genome sequencing of bread wheat facilitates disease resistance gene cloning

    2021

  • Evolution and diversification of reproductive phased small interfering RNAs in Oryza species

    2021

  • The chromosome-scale reference genome of safflower (Carthamus tinctorius) provides insights into linoleic acid and flavonoid biosynthesis

    2021

  • Genomic mechanisms of climate adaptation in polyploid bioenergy switchgrass

    2021

  • Author Correction: Mitochondrial plastid DNA can cause DNA barcoding paradox in plants

    2021

  • A route to de novo domestication of wild allotetraploid rice.

    2021

  • Mitochondrial plastid DNA can cause DNA barcoding paradox in plants

    2020

  • Evolution and Diversity of the Wild Rice Oryza officinalis Complex, across Continents, Genome Types, and Ploidy Levels

    2020

  • A platinum standard pan-genome resource that represents the population structure of Asian rice

    2020

  • Fish10K Pilot Project Data

    2020

  • Evolutionary Dynamics of Abundant 7-bp Satellites in the Genome of Drosophila virilis

    2020

  • Potential of Platinum Standard Reference Genomes to Exploit Natural Variation in the Wild Relatives of Rice

    2020

  • The gap-free rice genomes provide insights for centromere structure and function exploration and graph-based pan-genome construction

    2020

  • A genome assembly and the somatic genetic and epigenetic mutation rate in a wild long-lived perennial Populus trichocarpa

    2020

  • Initial data release and announcement of the 10,000 Fish Genomes Project (Fish10K)

    2020

  • Structural variants in 3000 rice genomes

    2019

  • Genome sequence of the model rice variety KitaakeX

    2019

  • The somatic genetic and epigenetic mutation rate in a wild long-lived perennial Populus trichocarpa

    2019

  • A chromosome-scale assembly of allotetraploid Brassica juncea (AABB) elucidates comparative architecture of the A and B genomes

    2019

  • Rapid evolution of protein diversity by de novo origination in Oryza

    2019

  • Genome-wide association mapping of date palm fruit traits

    2019

  • Twelve Platinum-Standard Reference Genomes Sequences (PSRefSeq) that complete the full range of genetic diversity of Asian rice

    2019

  • Machine Learning Reveals Spatiotemporal Genome Evolution in Asian Rice Domestication

    2019

  • The Genomics of Species Provides Insights into Rice Domestication and Heterosis

    2019

  • Comparison of Oryza sativa and Oryza brachyantha Genomes Reveals Selection-Driven Gene Escape from the Centromeric Regions

    2018

  • Erratum to: Genomes of 13 domesticated and wild rice relatives highlight genetic conservation, turnover and innovation across the genus Oryza (Nature Genetics, (2018), 50, 2, (285-296), 10.1038/s41588-018-0040-0)

    2018

  • Progress in single-access information systems for wheat and rice crop improvement

    2018

  • Genome and evolution of the shade-requiring medicinal herb Panax ginseng

    2018

  • Genomic variation in 3,010 diverse accessions of Asian cultivated rice

    2018

  • The rice genome revolution: From an ancient grain to Green Super Rice

    2018

  • Genotyping by sequencing of rice interspecific backcross inbred lines identifies QTLs for grain weight and grain length

    2018

  • Genomes of 13 domesticated and wild rice relatives highlight genetic conservation, turnover and innovation across the genus Oryza

    2018

  • Genetic control of seed shattering during African rice domestication

    2018

  • The rice paradox: Multiple origins but single domestication in Asian rice

    2017

  • Publisher correction: Young inversion with multiple linked QTLs under selection in a hybrid zone

    2017

  • A single-nucleotide polymorphism causes smaller grain size and loss of seed shattering during African rice domestication

    2017

  • Evolutionary analysis of the SUB1 locus across the Oryza genomes

    2017

  • Rice SNP-seek database update: new SNPs, indels, and queries

    2017

  • Selection in a hybrid zone: evidence for linked QTLs in a young inversion

    2017

  • The asparagus genome sheds light on the origin and evolution of a young Y chromosome

    2017

  • Young inversion with multiple linked QTLs under selection in a hybrid zone

    2017

  • Extensive gene tree discordance and hemiplasy shaped the genomes of North American columnar cacti

    2017

  • Aflatoxin-free transgenic maize using host-induced gene silencing

    2017

  • Extensive sequence divergence between the reference genomes of two elite indica rice varieties Zhenshan 97 and Minghui 63

    2016

  • Evolution of plant genome architecture

    2016

  • DNA transposon activity is associated with increased mutation rates in genes of rice and other grasses

    2016

  • DNA methylation changes facilitated evolution of genes derived from Mutator-like transposable elements

    2016

  • Host induced gene silencing inhibits aflatoxin production in transgenic maize when challenged with Aspergillus

    2016

  • Tracing ancestor rice of Suriname Maroons back to its African origin

    2016

  • Genome puzzle master (GPM): an integrated pipeline for building and editing pseudomolecules from fragmented sequences

    2016

  • Building two indica rice reference genomes with PacBio long-read and Illumina paired-end sequencing data

    2016

  • Sequencing of Australian wild rice genomes reveals ancestral relationships with domesticated rice

    2016

  • The Cardamine hirsuta genome offers insight into the evolution of morphological diversity

    2016

  • The Dark Side of the Genome: Revealing the Native Transposable Element/Repeat Content of Eukaryotic Genomes

    2016

  • Development and validation of cross-transferable and polymorphic DNA markers for detecting alien genome introgression in Oryza sativa from Oryza brachyantha

    2016

  • The impact and origin of copy number variations in the Oryza species

    2016

  • Genome and Comparative Transcriptomics of African Wild Rice Oryza longistaminata Provide Insights into Molecular Mechanism of Rhizomatousness and Self-Incompatibility

    2015

  • Complete chloroplast and ribosomal sequences for 30 accessions elucidate evolution of Oryza AA genome species

    2015

  • Harvesting rice's dispensable genome

    2015

  • Recurrent sequence exchange between homeologous grass chromosomes

    2015

  • RiTE database: a resource database for genus-wide rice genomics and evolutionary biology

    2015

  • Exceptional reduction of the plastid genome of saguaro cactus (Carnegiea gigantea): Loss of the ndh gene suite and inverted repeat

    2015

  • Red clover (Trifolium pratense L.) draft genome provides a platform for trait improvement

    2015

  • Sequencing of 15 622 gene-bearing BACs clarifies the gene-dense regions of the barley genome

    2015

  • Global genomic diversity of Oryza sativa varieties revealed by comparative physical mapping

    2014

  • Disentangling methodological and biological sources of gene tree discordance on Oryza (Poaceae) chromosome 3

    2014

  • Endogenous florendoviruses are major components of plant genomes and hallmarks of virus evolution

    2014

  • The genome sequence of African rice (Oryza glaberrima) and evidence for independent domestication

    2014

  • Comparative BAC-based physical mapping of Oryza sativa ssp. indica var. 93-11 and evaluation of the two rice reference sequence assemblies

    2014

  • A reference genome for common bean and genome-wide analysis of dual domestications

    2014

  • Making a living while starving in the dark: Metagenomic insights into the energy dynamics of a carbonate cave

    2014

  • Fifteen million years of evolution in the Oryza genus shows extensive gene family expansion

    2014

  • BAC-end sequences analysis provides first insights into coffee (Coffea canephora P.) genome composition and evolution

    2013

  • The Amborella genome and the evolution of flowering plants

    2013

  • Aluminum tolerance in maize is associated with higher MATE1 gene copy number

    2013

  • Whole-genome sequencing of Oryza brachyantha reveals mechanisms underlying Oryza genome evolution

    2013

  • The reference genome of the halophytic plant Eutrema salsugineum

    2013

  • Grain quality

    2013

  • The International Oryza Map Alignment Project: development of a genus-wide comparative genomics platform to help solve the 9 billion-people question

    2013

  • Preface

    2013

  • Perspective rice 2020 revised: An urgent call to mobilize and coordinate rice functional genomics research worldwide

    2013

  • The wild relative of Rice: Genomes and genomics

    2013

  • Detection and correction of assembly errors of rice Nipponbare reference sequence

    2013

  • BAC library development and clone characterization for dormancy-responsive DREB4A, DAM, and FT from leafy spurge (Euphorbia esula) identifies differential splicing and conserved promoter motifs

    2013

  • Evolution of a complex locus for terpene biosynthesis in Solanum

    2013

  • Genetics and genomics of rice

    2013

  • Genome studies and molecular genetics: Understanding the functional genome based on the rice model

    2013

  • Oil palm genome sequence reveals divergence of interfertile species in Old and New worlds

    2013

  • Profiling bacterial diversity and taxonomic composition on speleothem surfaces in Kartchner Caverns, AZ

    2013

  • Genomic resources for gene discovery, functional genome annotation, and evolutionary studies of maize and its close relatives

    2013

  • Ginger and turmeric expressed sequence tags identify signature genes for rhizome identity and development and the biosynthesis of curcuminoids, gingerols and terpenoids

    2013

  • High occurrence of functional new chimeric genes in survey of rice chromosome 3 short arm genome sequences

    2013

  • Assembly and validation of the genome of the nonmodel basal angiosperm Amborella

    2013

  • The tomato genome sequence provides insights into fleshy fruit evolution

    2012

  • A BAC library of the SP80-3280 sugarcane variety (saccharum sp.) and its inferred microsynteny with the sorghum genome

    2012

  • Life at the hyperarid margin: Novel bacterial diversity in arid soils of the Atacama Desert, Chile

    2012

  • Integration of the draft sequence and physical map as a framework for genomic research in soybean (glycine max (l.) merr.) and wild soybean (glycine soja sieb. and zucc.)

    2012

  • Comparative Sequence Analysis of the Ghd7 Orthologous Regions Revealed Movement of Ghd7 in the Grass Genomes

    2012

  • Ortholog alleles at Xa3/Xa26 locus confer conserved race-specific resistance against xanthomonas oryzae in rice

    2012

  • The genomes that make tomatoes

    2012

  • A physical, genetic and functional sequence assembly of the barley genome

    2012

  • Dynamic intra-japonica subspecies variation and resource application

    2012

  • Construction, characterization, and preliminary BAC-end sequence analysis of a bacterial artificial chromosome library of the tea plant (Camellia sinensis)

    2011

  • Molecular and Cytological Characterization of Centromeric Retrotransposons in a Wild Relative of Rice, Oryza granulata

    2011

  • A physical map for the Amborella trichopoda genome sheds light on the evolution of angiosperm genome structure

    2011

  • Advancing Eucalyptus genomics: Identification and sequencing of lignin biosynthesis genes from deep-coverage BAC libraries

    2011

  • The 19 genomes of Drosophila: A BAC library resource for genus-wide and genome-scale comparative evolutionary research

    2011

  • Gene-based SSR markers for common bean (Phaseolus vulgaris L.) derived from root and leaf tissue ESTs: An integration of the BMc series

    2011

  • Doubling genome size without polyploidization: Dynamics of retrotransposition-driven genomic expansions in Oryza australiensis, a wild relative of rice (Genome Research (2006) 16, (1262-1269))

    2011

  • The genome of Theobroma cacao

    2011

  • Conservation and purifying selection of transcribed genes located in a rice centromere

    2011

  • LysM-type mycorrhizal receptor recruited for rhizobium symbiosis in nonlegume Parasponia

    2011

  • Exceptional lability of a genomic complex in rice and its close relatives revealed by interspecific and intraspecific comparison and population analysis

    2011

  • Long-range and targeted ectopic recombination between the two homeologous chromosomes 11 and 12 in Oryza species

    2011

  • Orthologous comparisons of the Hd1 region across genera reveal hd1 gene lability within diploid oryza species and disruptions to microsynteny in sorghum

    2010

  • Phylogenomic analysis of BAC-end sequence libraries in Oryza (Poaceae)

    2010

  • Extensive gene conversion drives the concerted evolution of paralogous copies of the SRY gene in European rabbits

    2010

  • Genomic structure and evolution of the Pi2/9 locus in wild rice species

    2010

  • An integrated physical, genetic and cytogenetic map of Brachypodium distachyon, a model system for grass research

    2010

  • The Oryza BAC resource: A genus-wide and genome scale tool for exploring rice genome evolution and leveraging useful genetic diversity from wild relatives

    2010

  • Genome sequence of the palaeopolyploid soybean

    2010

  • Spatio-temporal patterns of genome evolution in allotetraploid species of the genus Oryza

    2010

  • The future of rice genomics: Sequencing the collective Oryza genome

    2010

  • Rice structural variation: A comparative analysis of structural variation between rice and three of its closest relatives in the genus Oryza

    2010

  • Erratum: Genome sequence of the palaeopolyploid soybean (Nature (2010) 463 (178-183))

    2010

  • Dynamic Oryza genomes: Repetitive DNA sequences as genome modeling agents

    2010

  • Australian Oryza: Utility and conservation

    2010

  • A draft physical map of a D-genome cotton species (Gossypium raimondii)

    2010

  • Assessing the extent of substitution rate variation of retrotransposon Long Terminal Repeat sequences in Oryza sativa and Oryza glaberrima

    2010

  • Hamiltonella defensa, genome evolution of protective bacterial endosymbiont from pathogenic ancestors

    2009

  • A single molecule scaffold for the maize genome

    2009

  • A lineage-specific centromere retrotransposon in Oryza brachyantha

    2009

  • Human gut microbiota in obesity and after gastric bypass

    2009

  • Comparative sequence analysis of the SALT OVERLY SENSITIVE1 orthologous region in Thellungiella halophila and Arabidopsis thaliana

    2009

  • Species trees from highly incongruent gene trees in rice

    2009

  • Comparative sequence analysis of MONOCULM1-orthologous regions in 14 Oryza genomes

    2009

  • Detailed analysis of a contiguous 22-Mb region of the maize genome

    2009

  • The physical and genetic framework of the maize B73 genome

    2009

  • The B73 maize genome: Complexity, diversity, and dynamics

    2009

  • A fruitful outcome to the papaya genome project

    2008

  • Construction of an Amaranthus hypochondriacus bacterial artificial chromosome library and genomic sequencing of herbicide target genes

    2008

  • A versatile transposon-based activation tag vector system for functional genomics in cereals and other monocot plants

    2008

  • A phylogenetic analysis of indel dynamics in the cotton genus

    2008

  • Construction, alignment and analysis of twelve framework physical maps that represent the ten genome types of the genus Oryza

    2008

  • The subtelomere of Oryza sativa chromosome 3 short arm as a hot bed of new gene origination in rice

    2008

  • The promoter signatures in rice LEA genes can be used to build a co-expressing LEA gene network

    2008

  • The Rice Annotation Project Database (RAP-DB): 2008 update

    2008

  • Dynamic evolution of oryza genomes is revealed by comparative genomic analysis of a genus-wide vertical data set

    2008

  • Methylation-sensitive linking libraries enhance gene-enriched sequencing of complex genomes and map DNA methylation domains

    2008

  • Evidence of multiple horizontal transfers of the long terminal repeat retrotransposon RIRE1 within the genus Oryza

    2008

  • The Amborella genome: An evolutionary reference for plant biology

    2008

  • Microsatellite discovery from BAC end sequences and genetic mapping to anchor the soybean physical and genetic maps

    2008

  • Rapid and differential proliferation of the Ty3-Gypsy LTR retrotransposon Atlantys in the genus Oryza

    2008

  • Diploid/polyploid syntenic shuttle mapping and haplotype-specific chromosome walking toward a rust resistance gene (Bru1) in highly polyploid sugarcane (2n ∼ 12x ∼ 115)

    2008

  • Rice genome sequence: The foundation for understanding the genetic systems

    2007

  • RL-SAGE and microarray analysis of the rice transcriptome after Rhizoctonia solani infection

    2007

  • Transposable element distribution, abundance and role in genome size variation in the genus Oryza

    2007

  • Evolutionary history and positional shift of a rice centromere

    2007

  • Plant centromere organization: a dynamic structure with conserved functions

    2007

  • Magnaporthe grisea infection triggers RNA variation and antisense transcript expression in rice

    2007

  • Comparative physical mapping between Oryza sativa (AA genome type) and O. punctata (BB genome type)

    2007

  • The barley ERF-type transcription factor HvRAF confers enhanced pathogen resistance and salt tolerance in Arabidopsis

    2007

  • Changes in regulation of a transcription factor lead to autogamy in cultivated tomatoes

    2007

  • Efficacy of clone fingerprinting methodologies

    2007

  • Evolutionary dynamics of an ancient retrotransposon family provides insights into evolution of genome size in the genus Oryza

    2007

  • Physical and genetic structure of the maize genome reflects its complex evolutionary history

    2007

  • Curated genome annotation of Oryza sativa ssp. japonica and comparative genome analysis with Arabidopsis thaliana: The Rice Annotation Project

    2007

  • The oryza map alignment project (OMAP): A new resource for comparative genome studies within oryza

    2007

  • Microcolinearity and genome evolution in the AdhA region of diploid and polyploid cotton (Gossypium)

    2007

  • Evolution of genes and genomes on the Drosophila phylogeny

    2007

  • Development of a BAC library for yellow-poplar (Liriodendron tulipifera) and the identification of genes associated with flower development and lignin biosynthesis

    2007

  • A global assembly of cotton ESTs

    2006

  • Uneven chromosome contraction and expansion in the maize genome

    2006

  • Two highly representative rice BAC libraries of japonica cv Tainung 67 suitable for rice structural and functional genomic research

    2006

  • Deep and comparative analysis of the mycelium and appressorium transcriptomes of Magnaporthe grisea using MPSS, RL-SAGE, and oligoarray methods

    2006

  • A bacterial artificial chromosome library for Biomphalaria glabrata, intermediate snail host of Schistosoma mansoni

    2006

  • Integration of hybridization-based markers (overgos) into physical maps for comparative and evolutionary explorations in the genus Oryza and in Sorghum

    2006

  • MGOS: A resource for studying Magnaporthe grisea and Oryza sativa interactions

    2006

  • New resources for marine genomics: Bacterial artificial chromosome libraries for the eastern and pacific oysters (Crassostrea virginica and C. gigas)

    2006

  • The Oryza bacterial artificial chromosome library resource: construction and analysis of 12 deep-coverage large-insert BAC libraries that represent the 10 genome types of the genus Oryza

    2006

  • Differential lineage-specific amplification of transposable elements is responsible for genome size variation in Gossypium

    2006

  • Erratum to "Utilization of a zebra finch BAC library to determine the structure of an avian androgen receptor genomic region" [Genomics 87 (2006) 181-190] (DOI:10.1016/j.ygeno.2005.09.005)

    2006

  • Construction of a nurse shark (Ginglymostoma cirratum) bacterial artificial chromosome (BAC) library and a preliminary genome survey

    2006

  • Utilization of a zebra finch BAC library to determine the structure of an avian androgen receptor genomic region

    2006

  • Doubling genome size without polyploidization: Dynamics of retrotransposition-driven genomic expansions in Oryza australiensis, a wild relative of rice

    2006

  • Genomic and genetic characterization of rice Cen3 reveals extensive transcription and evolutionary implications of a complex centromere

    2006

  • Single nucleotide polymorphisms and insertion-deletions for genetic markers and anchoring the maize fingerprint contig physical map

    2006

  • Whole-genome validation of high-information-content fingerprinting

    2005

  • The Oryza map alignment project: The golden path to unlocking the genetic potential of wild rice species

    2005

  • Random sheared fosmid library as a new genomic tool to accelerate complete finishing of rice (Oryza sativa spp. Nipponbare) genome sequence: sequencing of gap-specific fosmid clones uncovers new euchromatic portions of the genome

    2005

  • Construction of a bacterial artificial chromosome library from the spikemoss Selaginella moellendorffii: A new resource for plant comparative genomics

    2005

  • Sorghum expressed sequence tags identify signature genes for drought, pathogenesis, and skotomorphogenesis from a milestone set of 16,801 unique transcripts

    2005

  • Sequence, annotation, and analysis of synteny between rice chromosome 3 and diverged grass species. The Rice Chromosome 3 Sequencing Consortium

    2005

  • In-depth sequence analysis of the tomato chromosome 12 centromeric region: Identification of a large CAA block and characterization of pericentromere retrotranposons

    2005

  • The map-based sequence of the rice genome

    2005

  • Efficient insertional mutagenesis in rice using the maize En/Spm elements

    2005

  • Structure and architecture of the maize genome

    2005

  • Whole genome sequencing: Methodology and progress in cereals

    2005

  • Toward closing rice telomere gaps: Mapping and sequence characterization of rice subtelomere regions

    2005

  • Candidate gene database and transcript map for peach, a model species for fruit trees

    2005

  • Plant Molecular Biology: Editorial

    2005

  • The sequence of rice chromosomes 11 and 12, rich in disease resistance genes and recent gene duplications

    2005

  • Large-scale identification of expressed sequence tags involved in rice and rice blast fungus interaction

    2005

  • A 3347-Locus Genetic Recombination Map of Sequence-Tagged Sites Reveals Features of Genome Organization, Transmission and Evolution of Cotton (Gossypium)

    2004

  • Comparative population genetics of the panicoid grasses: Sequence polymorphism, linkage disequilibrium and selection in a diverse sample of Sorghum bicolor

    2004

  • Localization of jointless-2 gene in the centromeric region of tomato chromosome 12 based on high resolution genetic and physical mapping

    2004

  • Sequence analysis of the long arm of rice chromosome 11 for rice-wheat synteny

    2004

  • Structural features of the rice chromosome 4 centromere

    2004

  • Bacterial artificial chromosome (BAC) library resource for positional cloning of pest and disease resistance genes in cassava (Manihot esculenta Crantz)

    2004

  • The Ashbya gossypii Genome as a Tool for Mapping the Ancient Saccharomyces cerevisiae Genome

    2004

  • A new resource for cereal genomics: 22K Barley GeneChip comes of age

    2004

  • Incongruent patterns of local and global genome size evolution in cotton

    2004

  • Sequence composition and genome organization of maize

    2004

  • BAC end sequences and a physical map reveal transposable element content and clustering patterns in the genome of Magnaporthe grisea

    2004

  • Anchoring 9,371 maize expressed sequence tagged unigenes to the bacterial artificial chromosome contig map by two-dimensional overgo hybridization

    2004

  • Functional genomics of cell elongation in developing cotton fibers

    2004

  • Comparison of peach and Arabidopsis genomic sequences: Fragmentary conservation of gene neighborhoods

    2003

  • In-depth view of structure, activity, and evolution of rice chromosome 10

    2003

  • Rate variation among nuclear genes and the age of polyploidy in Gossypium

    2003

  • Construction and utility of 10-kb libraries for efficient clone-gap closure for rice genome sequencing

    2003

  • An improved method for plant BAC library construction.

    2003

  • New genomic resources for the honey bee (Apis mellifera L.): Development of a deep-coverage BAC library and a preliminary STC database

    2002

  • Pulsed-field gel electrophoresis for long-range restriction mapping.

    2002

  • An integrated physical and genetic map of the rice genome

    2002

  • Genetic, physical, and informatics resources for maize. On the road to an integrated map

    2002

  • Physical mapping, BAC-end sequence analysis, and marker tagging of the soilborne nematicidal bacterium, Pseudomonas synxantha BG33R

    2002

  • Dasheng: A recently amplified nonautonomous long terminal repeat element that is a major component of pericentromeric regions in rice

    2002

  • Genome dynamics and evolution of the Mla (powdery mildew) resistance locus in barley

    2002

  • MagnaportheDB: A federated solution for integrating physical and genetic map data with BAC end derived sequences for the rice blast fungus Magnaporthe grisea

    2002

  • A fine physical map of the rice chromosome 4

    2002

  • Resolution of fluorescence in-situ hybridization mapping on rice mitotic prometaphase chromosomes, meiotic pachytene chromosomes and extended DNA fibers

    2002

  • Construction and characterization of a deep-coverage bacterial artificial chromosome library for maize

    2002

  • Construction of BAC libraries from two apomictic grasses to study the microcolinearity of their apospory-specific genomic regions

    2002

  • Access to the maize genome: an integrated physical and genetic map.

    2002

  • A draft sequence of the rice genome (Oryza sativa L. ssp. japonica)

    2002

  • Toward integration of comparative genetic, physical, diversity, and cytomolecular maps for grasses and grains, using the sorghum genome as a foundation

    2001

  • High-resolution pachytene chromosome mapping of bacterial artificial chromosomes anchored by genetic markers reveals the centromere location and the distribution of genetic recombination along chromosome 10 of rice

    2001

  • Sequence and analysis of the tomato JOINTLESS locus

    2001

  • Toward a cytological characterization of the rice genome

    2001

  • Development of genomic resources for cotton (Gossypium hirsutum L.): BAC library construction, preliminary STC analysis, and identification of clones associated with fiber development

    2001

  • Construction of a 1.2-Mb contig including the citrus tristeza virus resistance gene locus using a bacterial artificial chromosome library of Poncirus trifoliata (L.) Raf.

    2001

  • Complete nucleotide sequence and organization of the atrazine catabolic plasmid pADP-1 from Pseudomonas sp. strain ADP

    2001

  • Chromosome landing at the bacterial blight resistance gene Xa4 locus using a deep coverage rice BAC library

    2001

  • A marker-dense physical map of the Bradyrhizobium japonicum genome

    2001

  • Melon bacterial artificial chromosome (BAC) library construction using improved methods and identification of clones linked to the locus conferring resistance to melon Fusarium wilt (Fom-2)

    2001

  • Grape (Vitis vinifera L.) BAC library construction, preliminary STC analysis, and identification of clones associated with flavonoid and stilbene biosynthesis

    2001

  • Evaluation of genetic variation in the daylily (Hemerocallis spp.) using AFLP markers

    2001

  • A framework for sequencing the rice genome

    2001

  • Locus-specific contig assembly in highly-duplicated genomes, using the BAC-RF method.

    2000

  • A bacterial artificial chromosome library for barley (Hordeum vulgare L.) and the identification of clones containing putative resistance genes

    2000

  • Physical mapping of the barley stem rust resistance genie rpg4

    2000

  • JOINTLESS is a MADS-box gene controlling tomato flower abscission zone development

    2000

  • Erratum: The Mla (powdery mildew) resistance cluster is associated with three NBS-LRR gene families and suppressed recombination within a 240-kb DNA interval on chromosome 5S (1HS) of Barley (Genetics 153 (1929-1948))

    2000

  • Rice Transposable elements: A survey of 73,000 sequence-tagged-connectors

    2000

  • Anchoring of rice BAC clones to the rice genetic map in silico

    2000

  • A deep-coverage tomato BAC library and prospects toward development of an STC framework for genome sequencing

    2000

  • Genetic mapping of jointless-2 to tomato chromosome 12 using RFLP and RAPD markers

    2000

  • A new approach for the identification and cloning of genes: the pBACwich system using Cre/lox site-specific recombination

    2000

  • A bacterial artificial chromosome library for sugarcane

    1999

  • Construction and characterization of a bacterial artificial chromosome (BAC) library for the A genome of wheat

    1999

  • Physical map and gene survey of the Ochrobactrum anthropi genome using bacterial artificial chromosome contigs

    1999

  • The Mla (powdery mildew) resistance cluster is associated with three NBS-LRR gene families and suppressed recombination within a 240-kb DNA interval on chromosome 5S (1HS) of barley

    1999

  • A bacterial artificial chromosome library for soybean PI 437654 and identification of clones associated with cyst nematode resistance

    1999

  • Tetraploid nature of Sorghum bicolor (L.) Moench

    1998

  • Cloning and characterization of a centromere-specific repetitive DNA element from Sorghum bicolor

    1998

  • Gene expression induced by physical impedance in maize roots

    1998

  • Physical mapping of the liguleless linkage group in sorghum bicolor using rice RFLP-selected sorghum BACs

    1998

  • A rapid procedure for the isolation of C sub 0 /sub t-1 DNA from plants

    1997

  • A rapid procedure for the isolation of C<inf>0</inf>t-1 DNA from plants

    1997

  • FISH of a maize sh2-selected sorghum BAC to chromosomes of Sorghum bicolor

    1997

  • Physical mapping of the rice genome with BACs

    1997

  • A large-insert (130 kbp) bacterial artificial chromosome library of the rice blast fungus Magnaporthe grisea: Genome analysis, contig assembly, and gene cloning

    1997

  • Microcolinearity in sh2-homologous regions of the maize, rice, and sorghum genomes

    1997

  • Construction and characterization of two rice Bacterial Artificial Chromosome libraries from the parents of a permanent recombinant inbred mapping population

    1996

  • A conserved repetitive DNA element located in the centromeres of cereal chromosomes

    1996

  • Gene identification in a complex chromosomal continuum by local genomic cross-referencing

    1996

  • The Hybaid Lecture. Microcollinearity and segmental duplication in the evolution of grass nuclear genomes.

    1996

  • Construction and characterization of a bacterial artificial chromosome library of Arabidopsis thaliana

    1995

  • Fluorescent in situ hybridization of a bacterial artificial chromosome

    1995

  • Cloning and characterization of the majority of repetitive DNA in cotton (Gossypium L.)

    1995

  • Construction and characterization of a bovine bacterial artificial chromosome library

    1995

  • Preparation of megabase-size DNA from plant nuclei

    1995

  • Isolation of megabase-size DNA from sorghum and applications for physical mapping and bacterial and yeast artificial chromosome library construction

    1995

  • A simple method for isolation of megabase DNA from cotton

    1994

  • Construction and characterization of a bacterial artificial chromosome library of Sorghum bicolor

    1994

  • Map-based cloning in crop plants: tomato as a model system II. Isolation and characterization of a set of overlapping yeast artificial chromosomes encompassing the jointless locus

    1994

  • A detailed RFLP map of Sorghum bicolor X S.propinquum, suitable for high-density mapping, suggests ancestral duplication of Sorghum chromosomes or chromosomal segments

    1994

  • Map-based cloning in crop plants. Tomato as a model system: I. Genetic and physical mapping of jointless

    1994

  • Pcr amplification from single seeds, facilitating DNA marker-assisted breeding

    1993

  • Genome mapping in plants

    1993

  • An improved method of plant megabase DNA isolation in agarose microbeads suitable for physical mapping and YAC cloning

    1993

  • High density molecular linkage maps of the tomato and potato genomes

    1992

  • Isolation of molecular markers from specific chromosomal intervals using DNA pools from existing mapping populations

    1991

  • Promoter analysis of genes that are coordinately expressed during pollen development reveals pollen-specific enhancer sequences and shared regulatory elements

    1991

  • Molecular and genetic characterization of two pollen-expressed genes that have sequence similarity to pectate lyases of the plant pathogen Erwinia

    1990

  • Isolation and expression of an anther-specific gene from tomato

    1989

  • Intracellular precursors and secretion of alkaline extracellular protease of Yarrowia lipolytica.

    1988

  • Integrative transformation of the yeast Yarrowia lipolytica

    1985

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