KMap
Ramin Yadegari, PhD, is interested in understanding the gene-regulatory processes that mediate fertilization and initiation of seed development. The plant life cycle alternates between a diploid sporophyte generation and a haploid gametophyte generation. The angiosperm female gametophyte is critical to the reproductive process. It is the structure within which egg cell production and fertilization take place. Using the model plant Arabidopsis thaliana, Dr. Yadegari and his lab are focusing on two specific processes: 1) development of the female gametophyte and 2) control of seed initiation by gene-regulatory complexes before and after fertilization. For example, they use a combination of expression-based analyses and genetic resources of Arabidopsis to identify major gene-regulatory networks involved in differentiation of the female gametophyte cell types. Similarly, using biochemical, molecular and genetic approaches, they identify components of the Polycomb-group complexes that mediate epigenetic repression of gene expression before fertilization.

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Courses
  • ATPDB
    Advanced Topics in Plant Developmental Biology

  • APG
    Animal and Plant Genetics

  • APB
    Advanced Plant Biology

  • PMB
    Plant Molecular Biology

  • CTPB
    Current Topics in Plant Biology

  • MPD
    Mechanisms in Plant Development

  • IBI
    Introductory Biology I

Grants
  • Funding agency logo
    Gene Regulatory Networks in the Maize Endosperm

    Principal Investigator (PI)

    2016

    $7.5M
    Active
  • Funding agency logo
    ABI Innovation: Gini-based methodologies to enhance network-scale transcriptome analysis in plants

    Co-Investigator (COI)

    2013

    $399.1K
  • Funding agency logo
    Regulation of Early Endosperm Development in Maize

    Principal Investigator (PI)

    2009

    $4.9M
  • Funding agency logo
    Arabidopsis 2010: Regulatory Networks Controlling Female Gametophyte Development

    Principal Investigator (PI)

    2005

    $2.1M
Technologies / Patents
      News
      • $7M Grant Supports Research of Endosperm Mechanics in Maize

        2017

      • Regulation of Early Endosperm Development in Maize

        2009

      Publications (48)
      Recent
      • Rearrangement with the nkd2 promoter contributed to allelic diversity of the r1 gene in maize (Zea mays)

        2022

      • Vision, challenges and opportunities for a Plant Cell Atlas

        2021

      • Broadening the impact of plant science through innovative, integrative, and inclusive outreach

        2021

      • Opaque-2 regulates a complex gene network associated with cell differentiation and storage functions of maize endosperm

        2018

      • FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 plays a dual role in regulating type I MADS-box genes in early endosperm development

        2018

      • Maize opaque mutants are no longer so opaque

        2018

      • FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.

        2018

      • Laser-Capture Microdissection of Maize Kernel Compartments for RNA-Seq-Based Expression Analysis

        2018

      • Opaque-2 Regulates a Complex Gene Network Associated with Cell Differentiation and Storage Functions of Maize Endosperm.

        2018

      • Endosperm development and cell specialization.

        2017

      • Arabidopsis CALCINEURIN B-LIKE10 functions independently of the SOS pathway during reproductive development in saline conditions

        2016

      • RNA sequencing of laser-capture microdissected compartments of the maize kernel identifies regulatory modules associated with endosperm cell differentiation

        2015

      • RNA-Seq analysis of laser-capture microdissected cells of the developing central starchy endosperm of maize

        2014

      • Maize early endosperm growth and development: from fertilization through cell type differentiation

        2014

      • Temporal patterns of gene expression in developing maize endosperm identified through transcriptome sequencing

        2014

      • Dynamic expression of imprinted genes associates with maternally controlled nutrient allocation during maize endosperm development

        2013

      • Identification of genes expressed in the angiosperm female gametophyte

        2011

      • Identification of transcription-factor genes expressed in the Arabidopsis female gametophyte

        2010

      • Plant SMU-1 and SMU-2 homologues regulate pre-mRNA splicing and multiple aspects of development

        2009

      • Molecular Plant: Editorial

        2009

      • Segregation distortion in Arabidopsis gametophytic factor 1 (gfa1) mutants is caused by a deficiency of an essential RNA splicing factor

        2007

      • RPK1 and TOAD2 are two receptor-like kinases redundantly required for arabidopsis embryonic pattern formation

        2007

      • Partially redundant functions of two SET-domain polycomb-group proteins in controlling initiation of seed development in Arabidopsis

        2006

      • Nucleic acids that control seed and fruit development in plants

        2006

      • Compositions and methods for modulating plant development

        2005

      • Method of enhancing endosperm development in a plant

        2004

      • The role of JAGGED in shaping lateral organs

        2004

      • Female gametophyte development

        2004

      • BRACTS is necessary and sufficient for bract development

        2003

      • BRACTS promotes bract formation on Arabidopsis flowers

        2002

      • RASPBERRY3 gene encodes a novel protein important for embryo development

        2002

      • Development and function of the angiosperm female gametophyte

        2002

      • Gene encodes a novel protein important for embryo development (vol 129, pg 691, 2002)

        2002

      • Nucleic acids that control endosperm development in plants

        2001

      • The Arabidopsis embryo mutant schlepperless has a defect in the chaperonin-60alpha gene

        2001

      • The Arabidopsis Embryo Mutant schlepperless Has a Defect in the Chaperonin-60α Gene

        2001

      • Mutations in the FIE and MEA genes that encode interacting polycomb proteins cause parent-of-origin effects on seed development by distinct mechanisms

        2000

      • Control of fertilization-independent endosperm development by the MEDEA polycomb gene in Arabidopsis

        1999

      • Imprinting of the MEDEA polycomb gene in the Arabidopsis endosperm

        1999

      • Mutations in FIE, a WD Polycomb Group Gene, Allow Endosperm Development without Fertilization

        1999

      • Regional specification and cellular differentiation during early plant embryogenesis

        1996

      • Cell Differentiation and Morphogenesis Are Uncoupled in Arabidopsis raspberry Embryos

        1994

      • Cell differentiation and morphogenesis are uncoupled in Arabidopsis raspberry embryos.

        1994

      • Plant embryogenesis: zygote to seed

        1994

      • Structure and nucleotide sequence of a Drosophila melanogaster protein kinase C gene.

        1987

      • The isolation, characterization and sequence of two divergent β-tubulin genes from soybean (Glycine max L.)

        1987

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