VOSviewer
Grants
- RCN: Sampling Nature: A Network to Enhance the Natural History Value Chain for Sustainability Science
Principal Investigator (PI)
2021
$30.4K
Active - TRIPODS+X:VIS: Data Science Pathways for a Vibrant TRIPODS Commons at Scale
Key Personnel (KP)
2018
$199.9K
Active - Space Domain Awareness Collaborative Research Infrastructure
Co-Investigator (COI)
2018
$3.3M
- Risk and Remediation of Metal-Mining Wastes
Co-Investigator (COI)
2017
$543.5K
- EAGER. Collaborative Research: Evaluating Identifier Services for the Life Cycle of Biological Data
Principal Investigator (PI)
2015
$65.4K
- Meeting: Identifying, Understanding, and Overcoming Technical Issues in Identifier Systems, Oracle, Arizona, Winter 2015-16
Principal Investigator (PI)
2015
$49.7K
News
- One-Third of Plant and Animal Species Could be Gone in 50 Years
2020
- Researchers 'Turn on the Lights' Across the Plant Tree of Life
2019
- Measuring species traits to monitor biodiversity
2018
- UA Team Part of International Space Surveillance Conference
2016
Publications (123)
Recent
- Evaluating the harmonisation potential of diverse cohort datasets
2023
- The future of rare disease drug development: the rare disease cures accelerator data analytics platform (RDCA-DAP)
2023
- Leveraging Biolink as a “Rosetta Stone” Between C-Path and EJP-RD Semantic Models Provides Emergent Interoperability
2023
- Categorization of material sample type across research domains
2022
- A solution to the challenges of interdisciplinary aggregation and use of specimen-level trait data
2022
- Establishing a Common Nutritional Vocabulary-From Food Production to Diet
2022
- Leveraging Biolink as a FAIR “Rosetta Stone” Between Clinical Semantic Models Provides Emergent Interoperability
2022
- Rare Diseases Cures Accelerator Data and Analytics Platform (RDCA-DAP) best practices and recommendations for FAIR data, toward alignment with International Regulatory agencies
2022
- Innovations in therapy development for rare diseases through the rare disease cures accelerator-data and analytics platform
2022
- Ontology Development Kit: a toolkit for building, maintaining and standardizing biomedical ontologies
2022
- MIxS-SA: a MIxS extension defining the minimum information standard for sequence data from symbiont-associated micro-organisms
2022
- Internet of Samples: Progress report
2021
- OBO Foundry in 2021: operationalizing open data principles to evaluate ontologies
2021
- Alleviating environmental health disparities through community science and data integration
2021
- Sample identifiers and metadata to support data management and reuse in multidisciplinary ecosystem sciences
2021
- Internet of samples
2021
- iSamples and Sampling Nature: Maximizing the Value of Today's Samples for Tomorrow's Science
2021
- Reporting guidelines for human microbiome research: the STORMS checklist
2021
- Internet of Samples: Creating and Mapping Controlled Vocabularies for Specimen Type, Material Type, and Sampled Feature
2021
- Ten simple rules to cultivate transdisciplinary collaboration in data science
2021
- COVID-19 pandemic reveals the peril of ignoring metadata standards
2020
- Unity in Variety: Developing a collection description standard by consensus
2020
- FuTRES, a functional trait resource for environmental studies, allows more precise body mass estimation for extinct mammals
2020
- iSamples (Internet of Samples): Cyberinfrastructure to Support Transdisciplinary Use of Natural History Material Samples
2020
- Open Science principles for accelerating trait-based science across the Tree of Life
2020
- Transforming the study of organisms: Phenomic data models and knowledge bases
2020
- Knowledge representation and data sharing to unlock crop variation for nutritional food security
2020
- Maize genomes to fields (G2F): 2014–2017 field seasons: genotype, phenotype, climatic, soil, and inbred ear image datasets
2020
- Identifier services: modeling and implementing distributed data management in cyberinfrastructure
2019
- Climate change, extinction, and Sky Island biogeography in a montane lizard
2019
- The plant ontology facilitates comparisons of plant development stages across species
2019
- Integrating herbarium specimen observations into global phenology data systems
2019
- Building a strategy towards an omic biodiversity observation network (Omic BON)
2019
- Developing a vocabulary and ontology for modeling insect natural history data: example data, use cases, and competency questions
2019
- FuTRES: Functional Trait Resource for Environmental Studies.
2019
- Improving Darwin Core for research and management of alien species
2019
- From Field Observations and Plant Specimens to a Trans-continental Knowledge Base: Efficient, semantically rich integration of highly heterogeneous plant phenological data.
2019
- Semantic Interoperability Solutions for the Essential Variables: Focus on biodiversity.
2019
- One thousand plant transcriptomes and the phylogenomics of green plants
2019
- An NSF-Wide Workshop to Explore the Prospects for a Common Response to the Requirements for Public Access to Research Data
2019
- Integrating ABCD and DarwinCore: Toward a better foundation for biodiversity information standards
2019
- Challenges and Recommendations for Genomics, Genetics and Breeding Databases from the AgBioData Consortium
2018
- Genomic Observatories Network: socio-technical perspectives on the path to long-term multi-omic observation
2018
- AgBioData consortium recommendations for sustainable genomics and genetics databases for agriculture
2018
- The plant phenology ontology: A new informatics resource for large-scale integration of plant phenology data
2018
- Identifier Services for Distributed Data Management
2018
- Digitization protocol for scoring reproductive phenology from herbarium specimens of seed plants
2018
- CyVerse: a ten-year perspective on cyberinfrastructure development, collaboration, and community building
2018
- ‘Computable’Phenotypes Enable Comparative and Predictive Phenomics Among Plant Species and Across Domains of Life
2018
- Humboldt Core–toward a standardized capture of biological inventories for biodiversity monitoring, modeling and assessment
2018
- Blockchain-enabled Data Trusts for Futuromics Research
2018
- A Service to Manage Data Identity Over Time
2018
- Accelerating the Large-Scale Study of Prokaryotic Phenotypes and Niche Space Evolution Through Time Using the MicrO Ontology, MicroPIE, and MicroPIEDigester Software
2018
- Crowds replicate performance of scientific experts scoring phylogenetic matrices of phenotypes
2018
- Towards global data products of Essential Biodiversity Variables on species traits
2018
- Modifier Ontologies for frequency, certainty, degree, and coverage phenotype modifier
2018
- Integrating and managing biodiversity data with the Biocollections Ontology
2018
- Maize genomes to fields: 2014 and 2015 field season genotype, phenotype, environment, and inbred ear image datasets
2018
- An update on the plant phenology ontology and plant phenology data integration
2017
- A High-throughput Data Ingest Pipeline for Semantic Data-stores
2017
- Invasive Organisms Information: A proposed TDWG task group
2017
- CyVerse Data Commons: lessons learned in cyberinfrastructure management and data hosting from the Life Sciences
2017
- Semantically Defining Populations for'Omics Research
2017
- Defining and Sustaining Populations and Communities.
2016
- MicrO: an ontology of phenotypic and metabolic characters, assays, and culture media found in prokaryotic taxonomic descriptions
2016
- A new approach to Space Domain Awareness at the University of Arizona
2016
- Creature Features: A semantic toolkit for biodiversity trait data
2016
- The environment ontology in 2016: bridging domains with increased scope, semantic density, and interoperation
2016
- An Introduction to the Plant Phenology Ontology
2016
- Resident space object characterization and behavior understanding via machine learning and ontology-based Bayesian networks
2016
- Content-based comparison for collections identification
2016
- Plant Specimen Contextual Data Consensus
2016
- Names and identifiers in the CyVerse cyberinfrastucture
2016
- A pragmatic path forward for integrating phenotype and trait data using ontologies
2016
- Assessing the IADC Space Debris Mitigation Guidelines: A case for ontology-based data management
2016
- Identifier services: tracking objects and metadata across time and distributed storage systems
2016
- Environmental Semantics for Sustainable Development in an Interconnected Biosphere.
2016
- Semantic linking of phenotypes and environments: A review
2015
- An ontology approach to comparative phenomics in plants
2015
- Hands-on Cyberinfrastructure Workshop-iPlant Collaborative Part 2-Not just for plants!
2015
- Modeling a microbial community and biodiversity assay with OBO Foundry ontologies: the interoperability gains of a modular approach
2015
- Meeting report: identifying practical applications of ontologies for biodiversity informatics
2015
- What do we really measure, when we measure characteristics of organisms?
2015
- Emerging semantics to link phenotype and environment
2015
- Community next steps for making globally unique identifiers work for biocollections data
2015
- Finding our way through phenotypes
2015
- Semantics in Support of Biodiversity Knowledge Discovery: An Introduction to the
2014
- Complex Data Modeling for Simpler Data Access
2014
- Using the Biological Collections Ontology to Advance Biodiversity Science
2014
- Meeting report: advancing practical applications of biodiversity ontologies
2014
- Strengthening Local Risk Governance: Local Hazard and Risk Zoning Exercise in The Gambia 2014
2014
- Genomic Biodiversity Working Interest Group (GBWG) Meeting
2014
- Semantics in Support of Biodiversity: An Introduction to the Biological Collections Ontology and Related Ontologies
2014
- A Specimen-based View of the World
2014
- Nose to tail, roots to shoots: spatial descriptors for phenotypic diversity in the Biological Spatial Ontology
2014
- Integrating Phenological, Trait and Environmental Data For Continental Scale Analysis: A Community Approach
2014
- The Plant Ontology as a Tool for Comparative Plant Anatomy and Genomic Analyses
2013
- Clarifying concepts and terms in biodiversity informatics
2013
- Ontological Descriptions of Phenotypes, with a Case Study in Maize
2013
- A New Metadata Checklist For Describing Species Inventory Completeness
2013
- Linking Biodiversity Data with the Biological Collections Ontology
2013
- Front & Back Matter
2013
- Next-generation phenomics for the Tree of Life
2013
- Mapping of glossary terms from the Flora of North America to the Plant Ontology enhances both resources.
2012
- Mapping the biosphere: exploring species to understand the origin, organization and sustainability of biodiversity
2012
- Compliance with school F-milk and non-F milk intake in 3 to 4 and 6 to 7 year old children
2012
- Ontologies as integrative tools for plant science
2012
- A plant disease extension of the Infectious Disease Ontology
2012
- An Extension of the Plant Ontology Project Supporting Wood Anatomy and Development Research
2012
- Total daily fluoride intake and fractional urinary excretion of fluoride in 6-to 7-year-olds
2011
- Angiosperm leaf vein patterns are linked to leaf functions in a global‐scale data set
2011
- The Plant Ontology: A common reference ontology for plants
2010
- Hybridization and Plasticity Contribute to Divergence Among Coastal and Wetland Populations of Invasive Hybrid Japanese Knotweed s.l. (Fallopia spp.)
2010
- Urinary fluoride excretion (UFE) in 6-7y olds using F milk
2010
- Form, function, and phylogeny: Angiosperm leaf trait evolution, with a case study in the genus Dioscorea
2009
- Plasticity in salt tolerance traits allows for invasion of novel habitat by Japanese knotweed s. l. (Fallopia japonica and F.×bohemica, Polygonaceae)
2008
- Hotel Construction Survey.
2007
- Meeting Minutes
2006
- Fertility, Root Reserves and the Cost of Inducible Defenses in the Perennial Plant Solanum carolinense
2005
- The impact of experimental sedimentation and flooding on the growth and germination of floodplain trees
2005