VOSviewer
Courses
- REEResearch in Ecology and Evolution
- FEGFunctional and Evolutionary Genomics
- BBioinformatics
Grants
- EAGER-NEON: Genomic Plasticity in Response to Variable Environments
Principal Investigator (PI)
2016
$300.0K
- Polyploidy and plasticity in the crop Brassicas
Co-Investigator (COI)
2014
$812.5K
- Developing a Predictive Genomic Framework to Understand the Outcomes of Hybridization
Principal Investigator (PI)
2014
$10.0K
News
- Researchers 'Turn on the Lights' Across the Plant Tree of Life
2019
- UA Biologists Find Answer to 100-Year-Old Question
2018
- Ancient Genetic 'Baby Boom' of Conifers Uncovered
2015
- Research Uses DNA to Study Key Events in Plant Evolution
2014
- When Plants Go Polyploid
2011
Publications (114)
Recent
- Dynamic genome evolution in a model fern
2022
- Chromosome-Scale Genome Assembly of Gilia yorkii Enables Genetic Mapping of Floral Traits in an Interspecies Cross
2022
- Demographic history inference and the polyploid continuum
2022
- Chromosome-scale reference genome and RAD-based genetic map of yellow starthistle (Centaurea solstitialis) reveal putative structural variation and QTLs associated with invader …
2022
- Genome size evolution in the diverse insect order Trichoptera
2022
- Patterns and Processes of Diploidization in Land Plants
2021
- Underwater CAM photosynthesis elucidated by Isoetes genome
2021
- Genes derived from ancient polyploidy have higher genetic diversity and are associated with domestication in Brassica rapa
2021
- Analysis of the Coptis chinensis genome reveals the diversification of protoberberine-type alkaloids
2021
- Applying Machine Learning to Classify the Origins of Gene Duplications
2021
- Modelling of gene loss propensity in the pangenomes of three Brassica species suggests different mechanisms between polyploids and diploids
2021
- Data from: Development of an ultra-dense genetic map of the sunflower genome
2021
- Animal chromosome counts reveal a similar range of chromosome numbers but with less polyploidy in animals compared to flowering plants
2021
- Data from: Recently-formed polyploid plants diversify at lower rates
2021
- The contributions from the progenitor genomes of the mesopolyploid Brassiceae are evolutionarily distinct but functionally compatible
2021
- Pilot RNA‐seq data from 24 species of vascular plants at Harvard Forest
2021
- Data from: Genomics of Compositae weeds: EST libraries, microarrays, and evidence of introgression
2021
- Chromosome-scale inference of hybrid speciation and admixture with convolutional neural networks
2021
- Anthoceros genomes illuminate the origin of land plants and the unique biology of hornworts
2020
- Progress Towards Plant Community Transcriptomics: Pilot RNA-Seq Data from 24 Species of Vascular Plants at Harvard Forest
2020
- Polyploid plants have faster rates of multivariate niche differentiation than their diploid relatives
2020
- Polyploids increase overall diversity despite higher turnover than diploids in the Brassicaceae
2020
- Inferring the demographic history of inbred species from genome-wide snp frequency data
2020
- Animal chromosome counts reveal similar range of chromosome numbers but with less polyploidy in animals compared to flowering plants
2020
- Inferring putative ancient whole-genome duplications in the 1000 Plants (1KP) initiative: access to gene family phylogenies and age distributions
2020
- Sequencing and analyzing the transcriptomes of a thousand species across the tree of life for green plants
2020
- TagSeq for gene expression in non‐model plants: A pilot study at the Santa Rita Experimental Range NEON core site
2020
- Phylogeny and multiple independent whole‐genome duplication events in the Brassicales
2020
- The Chimonanthus salicifolius genome provides insight into magnoliid evolution and flavonoid biosynthesis
2020
- Illumina GAII Library Construction and Sequencing for RNA Seq
2019
- Access to RNA-sequencing data from 1,173 plant species: The 1000 Plant transcriptomes initiative (1KP)
2019
- Current Status and Future Prospects for Fern and Lycophyte Genomics: Introduction to an American Fern Journal Special Issue
2019
- Polyploid plants have faster rates of multivariate niche evolution than their diploid relatives
2019
- One thousand plant transcriptomes and the phylogenomics of green plants
2019
- Polyploidy increases overall diversity despite higher turnover than diploids in the Brassicaceae
2019
- Reply to Nakatani and McLysaght: analyzing deep duplication events
2019
- Inferring putative ancient whole genome duplications in the 1000 Plants (1KP) initiative: access to gene family phylogenies and age distributions
2019
- Sequencing protocols for the one thousand plant transcriptomes initiative
2019
- Hiseq 2000 Library Construction and Sequencing for RNA Seq
2019
- Transcriptome and organellar sequencing highlights the complex origin and diversification of allotetraploid Brassica napus
2019
- Fern genomes elucidate land plant evolution and cyanobacterial symbioses
2018
- Multiple large-scale gene and genome duplications during the evolution of hexapods
2018
- Polyploid plants have faster rates of multivariate climatic niche evolution than their diploid relatives
2018
- Assessing the performance of Ks plots for detecting ancient whole genome duplications
2018
- A Gneato nuclear genome
2018
- Impact of whole-genome duplication events on diversification rates in angiosperms
2018
- Multilocus phylogenetic reconstruction informing polyploid relationships of Aconitum subgenus Lycoctonum (Ranunculaceae) in China
2017
- A successful in vitro propagation technique for resurrection plants of the Selaginellaceae
2017
- Diverse genome organization following 13 independent mesopolyploid events in Brassicaceae contrasts with convergent patterns of gene retention
2017
- Genomic inferences of domestication events are corroborated by written records in Brassica rapa
2017
- The Compositae Tree of Life in the age of phylogenomics
2017
- Transcriptome-derived evidence supports recent polyploidization and a major phylogeographic division in T rithuria submersa (H ydatellaceae, N ymphaeales)
2016
- A community-derived classification for extant lycophytes and ferns
2016
- Is hybridization driving the evolution of climatic niche in Alyssum montanum?
2016
- Spreading Winge and flying high: the evolutionary importance of polyploidy after a century of study
2016
- The small nuclear genomes of Selaginella are associated with a low rate of genome size evolution
2016
- Methods for studying polyploid diversification and the dead end hypothesis: a reply to Soltis et al.(2014)
2015
- Early genome duplications in conifers and other seed plants
2015
- On the relative abundance of autopolyploids and allopolyploids
2015
- Transcriptome-derived evidence supports recent polyploidization and a major phylogeographic division in Trithuria submersa (Hydatellaceae, Nymphaeales)
2015
- The butterfly plant arms-race escalated by gene and genome duplications
2015
- Between two fern genomes
2014
- Genomics of Compositae crops: reference transcriptome assemblies and evidence of hybridization with wild relatives
2014
- Phylotranscriptomic analysis of the origin and early diversification of land plants
2014
- Data access for the 1,000 Plants (1KP) project
2014
- A total evidence approach to understanding phylogenetic relationships and ecological diversity in Selaginella subg. Tetragonostachys
2013
- Polyploidy in Plants and Animals
2012
- Duplications and turnover in plant genomes
2012
- Rarely successful polyploids and their legacy in plant genomes
2012
- Karyotype and genome evolution in pteridophytes
2012
- Genomics of Compositae weeds: EST libraries, microarrays, and evidence of introgression
2012
- Development of an ultra-dense genetic map of the sunflower genome based on single-feature polymorphisms
2012
- Quantitative visualization of biological data in G oogle E arth using R 2 G 2, an R CRAN package
2012
- Molecular evolution across the Asteraceae: micro-and macroevolutionary processes
2011
- Recently formed polyploid plants diversify at lower rates
2011
- De novo characterization of the gametophyte transcriptome in bracken fern, Pteridium aquilinum
2011
- The Selaginella genome identifies genetic changes associated with the evolution of vascular plants
2011
- The compact Selaginella genome identifies changes in gene content associated with the evolution of vascular plants
2011
- PART OF A HIGHLIGHT ON GENES IN EVOLUTION
2010
- Unfurling fern biology in the genomics age
2010
- EvoPipes. net: bioinformatic tools for ecological and evolutionary genomics
2010
- Establishing genomic tools and resources for Guizotia abyssinica (L.f.) Cass.—the development of a library of expressed sequence tags, microsatellite loci, and the …
2010
- NU-IN: Nucleotide evolution and input module for the EvolSimulator genome simulation platform
2010
- Functional Genomics of Fern Gametophytes: Transcriptome Sequencing in Pteridium aquilinum
2010
- Establishing genomic tools and resources for Guizotia abyssinica (Lf) Cass.—the development of a library of expressed sequence tags, microsatellite loci, and the sequencing of its chloroplast genome
2010
- Probabilistic models of chromosome number evolution and the inference of polyploidy
2010
- Evolutionary genomic analyses of ferns reveal that high chromosome numbers are a product of high retention and fewer rounds of polyploidy relative to angiosperms
2009
- The frequency of polyploid speciation in vascular plants
2009
- Summary of the 2008 AFS Symposium: From Gels to Genomics: The Evolving Landscape of Pteridology. A Celebration of Gerald Gastony's Contributions to Fern Evolutionary Biology
2009
- Paleopolyploidy in the Brassicales: analyses of the Cleome transcriptome elucidate the history of genome duplications in Arabidopsis and other Brassicales
2009
- Comparative genomic and population genetic analyses indicate highly porous genomes and high levels of gene flow between divergent Helianthus species
2009
- SCARF: maximizing next-generation EST assemblies for evolutionary and population genomic analyses
2009
- A Brief History of Gerald J. Gastony's Botanical Career
2009
- Paleopolyploidy and the evolution of plants
2009
- Evolution of the nuclear genome of ferns and lycophytes
2008
- Contribution to The Pteridophyte Flora of Puerto Rico
2008
- Multiple paleopolyploidizations during the evolution of the Compositae reveal parallel patterns of duplicate gene retention after millions of years
2008
- The impact of doppler radar data on rainfall forecast: A cave study of a convective rainband event in Mississippi Delta using WRF 3D-Var [presentation]
2007
- Gene co-inheritance and gene transfer
2007
- A TAXONOMIC REVISION OF CARIBBEAN ADIANTOPSIS (PTERIDACEAE) 1, 2
2006
- A Natural History of Ferns
2005
- Lepidopteran Soral Crypsis on Caribbean Ferns1
2005
- Maternal expression relaxes constraint on innovation of the anterior determinant, bicoid
2005
- Lepidopteran soral crypsis on caribbean ferns 1
2005
- Notes on the genus Lygodium Sw.(Schizaeaceae) in Malaysia
2004
- An Adiantopsis hybrid from Northeastern Argentina and vicinity
2003
- Botrychium lanceolatum subsp. angustisegmentum in Ohio
2003
- A Revision of Caribbean Adiantopsis
2003
- An evaluation of Sceptridium dissectum (Ophioglossaceae) with ISSR markers: implications for Sceptridium systematics
2003