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Evolution in the plant family Brassicaceae (mustard family) Plant telomeres Evolution of protein complexes Evolution of Long Intergenic Non-coding RNAs

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Research Opportunities
  • Undergrad Research Opp Paid, For Credit

    Grant: Not Listed

    Prerequisite Courses: MCB181, CHEM151, CHEM152 Majors: MCB, BIOL, PLS, BCHM, PHYS ...
Courses
  • REE
    Research in Ecology and Evolution

  • APG
    Animal and Plant Genetics

  • IBI
    Introductory Biology I

Grants
  • Funding agency logo
    STC: Center for Research On Programmable Plant Systems

    Co-Investigator (COI)

    2021

    $961.8K
    Active
  • Funding agency logo
    Bench Fees for Sana Shakoor

    Principal Investigator (PI)

    2020

    $3.5K
  • Funding agency logo
    Structural, Functional, and Evolutionary Analysis of Long Non-coding RNAs in Control of Stress Response and the Epigenome in Diverse Plant Species (REU)

    Principal Investigator (PI)

    2016

    $18.0K
  • Funding agency logo
    Structural, Functional, and Evolutionary Analysis of Long Non-coding RNAs in Control of Stress Response and the Epigenome in Diverse Plant Species

    Principal Investigator (PI)

    2015

    $1.3M
  • Funding agency logo
    Telomerase Evolution and Function in Plants

    Principal Investigator (PI)

    2014

    $522.0K
  • Funding agency logo
    Telomerase Evolution in Plants

    Principal Investigator (PI)

    2014

    $9.9K
  • Funding agency logo
    Recovering the origins and cultivation history of Gold-of-Pleasure (Camelina sativa)

    Principal Investigator (PI)

    2013

    $19.7K
  • Funding agency logo
    ID 22366: Identifying Alternatives functions of the Telomerase Reverse Transcriptase (TERT)

    Principal Investigator (PI)

    2013

    $14.0K
Technologies / Patents
      News
      • Researchers Develop Tools to Listen, Talk to Plants with $25M from NSF

        2021

      • Blog Series: UA Students Studying, Researching Abroad

        2014

      • UA Conference for Undergrad Research Celebrates 25th Year

        2014

      Publications (41)
      Recent
      • Evolutionary analysis of the LORELEI gene family in plants reveals regulatory subfunctionalization

        2022

      • Identification and functional annotation of long intergenic non-coding RNAs in Brassicaceae

        2022

      • A Conserved Long Intergenic Non-coding RNA Containing snoRNA Sequences, , Affects Arabidopsis Germination and Development

        2022

      • A conserved long intergenic non-coding RNA containing snoRNA sequences, lncCOBRA1, affects Arabidopsis germination and development

        2022

      • Evolutionary and biochemical analyses reveal conservation of the Brassicaceae telomerase ribonucleoprotein complex

        2020

      • Divergence-based introgression polarization

        2020

      • Duplication and functional divergence of a calcium sensor in the Brassicaceae

        2020

      • N6‐methyladenosine and RNA secondary structure affect transcript stability and protein abundance during systemic salt stress in Arabidopsis

        2020

      • Biased gene retention in the face of introgression obscures species relationships

        2020

      • Agrobacterium-mediated floral-dip transformation of the obligate outcrosser Capsella grandiflora

        2019

      • A Chemical Biology Approach to Model Pontocerebellar Hypoplasia Type 1B (PCH1B)

        2018

      • Phylogenetics of Camelina Crantz.(Brassicaceae) and insights on the origin of gold-of-pleasure (Camelina sativa)

        2018

      • Evidence for a Unique DNA-Dependent RNA Polymerase in Cereal Crops

        2018

      • N-6-Methyladenosine Inhibits Local Ribonucleolytic Cleavage to Stabilize mRNAs in Arabidopsis

        2018

      • N6-methyladenosine inhibits local ribonucleolytic cleavage to stabilize mRNAs in Arabidopsis

        2018

      • Evolinc: a tool for the identification and evolutionary comparison of long intergenic non-coding RNAs

        2017

      • Evolinc:A Tool for the Identification and Evolutionary Comparison of Long Intergenic Non-coding RNAs

        2017

      • Evolutionary interplay between sister cytochrome P450 genes shapes plasticity in plant metabolism

        2016

      • Evolution of Arabidopsis protection of telomeres 1 alters nucleic acid recognition and telomerase regulation

        2016

      • A Genomic Analysis of Factors Driving lincRNA Diversification: Lessons from Plants

        2016

      • The Argonaute-binding platform of NRPE1 evolves through modulation of intrinsically disordered repeats

        2016

      • Evolution of the telomere-associated protein POT1a in Arabidopsis thaliana is characterized by positive selection to reinforce protein-protein interaction

        2015

      • Evolution of the Telomere-Associated Protein POT1a in Arabidopsis thaliana Is Characterized by Positive Selection to Reinforce Protein–Protein Interaction

        2015

      • Ancient origin and recent innovations of RNA Plymerase IV and V

        2015

      • Global Analysis of the RNA-Protein Interaction and RNA Secondary Structure Landscapes of the Arabidopsis Nucleus

        2015

      • Distinct Roles for SOS1 in the Convergent Evolution of Salt Tolerance in Eutrema salsugineum and Schrenkiella parvula

        2014

      • Distinct roles of SOS1 in the convergent evolution of salt tolerance in Eutrema salsugineum and Schrenkiella parvula

        2014

      • Diversification times among Brassica (Brassicaceae) crops suggest hybrid formation after 20 million years of divergence

        2014

      • Extending the model of Arabidopsis telomere length and composition across Brassicaceae

        2014

      • The reference genome of the halophytic plant Eutrema salsugineum

        2013

      • Evolution of the Arabidopsis telomerase RNA

        2012

      • A duplicate gene rooting of seed plants and the phylogenetic position of flowering plants

        2010

      • Polyploid genome of Camelina sativa revealed by isolation of fatty acid synthesis genes

        2010

      • Evolution of CST function in telomere maintenance

        2010

      • Dated molecular phylogenies indicate a Miocene origin for Arabidopsis thaliana

        2010

      • 9 Cytoskeletal requirements during Arabidopsis trichome development

        2009

      • Brassicaceae phylogeny inferred from phytochrome A and ndhF sequence data: Tribes and trichomes revisited

        2008

      • Brassicaceae phylogeny and trichome evolution

        2006

      • Systematics and phylogeny of the Brassicaceae (Cruciferae): an overview

        2006

      • Pennellia brachycarpa (Brassicaceae), a new species from Jujuy, Argentina

        2005

      • A phylogenetic analysis of western North American Draba (Brassicaceae) based on nuclear ribosomal DNA sequences from the ITS region

        2003

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